Basic Information

Insect: Leucophenga maculata
Gene Symbol: -
Assembly: GCA_035044805.1
Location: JAWNNP010002956.1:2561084-2562976[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.066 4.1 8.4 0.2 5 22 84 101 83 104 0.89

2 11 0.00065 0.04 14.7 0.5 1 22 121 142 121 145 0.91

3 11 0.013 0.79 10.6 9.4 1 23 149 171 149 171 0.98

4 11 4.2e-06 0.00026 21.6 3.4 1 23 177 199 177 199 0.98

5 11 0.00025 0.015 16.0 1.3 1 23 205 227 205 227 0.95

6 11 7e-06 0.00043 20.9 2.5 1 23 271 293 271 293 0.98

7 11 2.1e-06 0.00013 22.5 2.4 1 23 299 321 299 321 0.98

8 11 0.0011 0.066 14.0 0.1 1 20 327 346 327 349 0.95

9 11 1.6e-06 9.9e-05 22.9 4.7 1 23 392 414 392 414 0.99

10 11 7.4e-07 4.5e-05 24.0 2.9 1 23 420 442 420 442 0.99

11 11 3.8e-05 0.0024 18.6 1.2 1 23 448 470 448 470 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.066	4.1	8.4	0.2	5	22	84	101	83	104	0.89
2	11	0.00065	0.04	14.7	0.5	1	22	121	142	121	145	0.91
3	11	0.013	0.79	10.6	9.4	1	23	149	171	149	171	0.98
4	11	4.2e-06	0.00026	21.6	3.4	1	23	177	199	177	199	0.98
5	11	0.00025	0.015	16.0	1.3	1	23	205	227	205	227	0.95
6	11	7e-06	0.00043	20.9	2.5	1	23	271	293	271	293	0.98
7	11	2.1e-06	0.00013	22.5	2.4	1	23	299	321	299	321	0.98
8	11	0.0011	0.066	14.0	0.1	1	20	327	346	327	349	0.95
9	11	1.6e-06	9.9e-05	22.9	4.7	1	23	392	414	392	414	0.99
10	11	7.4e-07	4.5e-05	24.0	2.9	1	23	420	442	420	442	0.99
11	11	3.8e-05	0.0024	18.6	1.2	1	23	448	470	448	470	0.95

Sequence Information

Coding Sequence: ATGGATTGTGTGAAGGTGCAGATGAGTGATAACGAAGCAAATTTTGCAACAATGCCAATGAATGCGGCAGTTGTTAAAGAAGAACTCGATTTGGAAGCTATTGTGTGGTCTGATGATGAAGAGTTTTCCAATGCAacgttaaaaacaaatttaaatgatgTAAAAAAACCAACAATGAACTACGAAGATGAGGATATAGAACAAACAACTTCAGTAATACCAAATGATGATGGAAAGACATATTTATGCGAgtgcaaaataaacttttcgaCAGCTGTAGCATTAAAAGAACATATGTTGCAACAAGAGCACAAACATATACTAGCTACACATATCCTTAAGCATAGTAAGGAACAGGCTTATGTTTGCAAAATGTGTGGCGCCACATTTAGTGGACCGTTTCTACTGAGTACACATACAAAACAGTACAATCATGAAAAAATGCATCAATGTGATCATTGTGACAAGCGttttcattttGCGACAACTAAGCGTAAGCACATGCTTACACACACTGGAGATAAGCCGCACAAATGTAAATACTGTGAACGTGCTTTTGCACAAAGATACAATCTCATGACACACCTCTCAACGCATCTTGGCAGTGAAGTTTACTGTTGTTACCTCTGTCCACGTGGCTTTCAGCGTTCTACTGAATTACGTAGGCACATTGCAGCACATAAAAATGAGGATGCTGAGACGCGCAAAAGAAATCTAGTTGAGCTGCAAAAGAAAGAAGCTGCTTTAAAGTTACAGTTAAGCAGTTCTACAGCGTATATGGCAGAAGCAAATCAGTTGCGTGAAACGCGCTATAAATGTGAGCTCTGCGAAATGTGcttcacaaataaacaaaatttaggcACGCACATGCGTGCACATACAGGCGAAAAGCCATACAAGTGTAAATATTGCGAACAGGCTTTTACGCATGCTTCTGCATATAACAGACATCTGCGTGCACATCTTGGtgatgaaatttatatttgtacacTTTGTCCACGGGGCTTTCAAAGACCAACGGAGCTACAAAATCACTATCCGGCACATAAAAAGGAAGATGCTGAGACACGCGCTAGAAATTTAGCTGCGCTGCAAGCAAAGGAGGCTGCATTGAAACTCAGTTTACAAATTTCGAACGCAGAGACAGAAgTAAaccaaatgaaagaaaaaccaTATAAATGTGACAACTGCGAAATGTGcTTCAGtaataaacaaagtttaaaaactcACATTCGTACACACACTGGCGAACAGCCTTACAAATGTAAATACTGTGAACAGTCTTTTACGTATAGTTCCAGTTATATCCGGCATCTACGCATACATCTAGGCAACGAAATCTATAATTGTGAACATTGTCCGCGCGGCTTTCGATTGAACTCCGAACTGCGTAAGCACTATGCGGCACACAAAAATGATGATGCTGTTACCCGTAGAATAAATCTAGCTGCTCGTCAAAACAAAGATGATGAATTAATGCTTAAGATGTGTAATACACGGGAATTGGAAACAAAATTCTCGCTGATAAGTCACACCAATGTGCAGACCGAAAGTATTTAG
Protein Sequence: MDCVKVQMSDNEANFATMPMNAAVVKEELDLEAIVWSDDEEFSNATLKTNLNDVKKPTMNYEDEDIEQTTSVIPNDDGKTYLCECKINFSTAVALKEHMLQQEHKHILATHILKHSKEQAYVCKMCGATFSGPFLLSTHTKQYNHEKMHQCDHCDKRFHFATTKRKHMLTHTGDKPHKCKYCERAFAQRYNLMTHLSTHLGSEVYCCYLCPRGFQRSTELRRHIAAHKNEDAETRKRNLVELQKKEAALKLQLSSSTAYMAEANQLRETRYKCELCEMCFTNKQNLGTHMRAHTGEKPYKCKYCEQAFTHASAYNRHLRAHLGDEIYICTLCPRGFQRPTELQNHYPAHKKEDAETRARNLAALQAKEAALKLSLQISNAETEVNQMKEKPYKCDNCEMCFSNKQSLKTHIRTHTGEQPYKCKYCEQSFTYSSSYIRHLRIHLGNEIYNCEHCPRGFRLNSELRKHYAAHKNDDAVTRRINLAARQNKDDELMLKMCNTRELETKFSLISHTNVQTESI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -