Lmac015490.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophenga maculata
Gene Symbol
-
Assembly
GCA_035044805.1
Location
JAWNNP010002956.1:2531061-2535518[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0026 0.16 12.8 0.2 1 22 77 98 77 101 0.91
2 16 0.00027 0.017 15.9 4.4 2 23 106 127 105 127 0.97
3 16 9.4e-05 0.0058 17.3 3.3 1 23 133 155 133 155 0.99
4 16 0.00054 0.033 15.0 0.4 1 23 161 183 161 183 0.94
5 16 0.15 9.4 7.2 0.4 3 23 287 310 286 310 0.91
6 16 0.0041 0.25 12.2 0.7 1 23 316 338 316 338 0.98
7 16 0.0009 0.056 14.2 0.4 1 21 342 362 342 366 0.90
8 16 6.4e-05 0.004 17.8 4.7 2 23 371 392 370 392 0.97
9 16 1.7e-05 0.0011 19.6 3.6 1 23 398 420 398 420 0.99
10 16 9.5e-05 0.0059 17.3 0.4 1 23 426 448 426 448 0.96
11 16 7.9e-06 0.00049 20.7 3.3 1 23 490 512 490 512 0.99
12 16 1.6e-06 0.0001 22.9 4.3 1 23 518 540 518 540 0.99
13 16 0.057 3.5 8.6 0.7 1 20 546 565 546 568 0.93
14 16 4.2e-07 2.6e-05 24.7 2.4 1 23 611 633 611 633 0.99
15 16 8.9e-06 0.00055 20.6 7.0 1 23 639 661 639 661 0.99
16 16 2.5e-05 0.0016 19.1 2.2 1 23 667 689 667 689 0.98

Sequence Information

Coding Sequence
ATGGAATTGAGTGATAATGATGACGATTCTGCAAATATGCTGACAGATACGGTTATTGTTAAAGAGGAACTGGATTTGGAGGACATTGTATGGCCGGACGAATTGTGTTCGAATGATACATTTAGAACAAGTTCCGTAATGAATGATGTCAAGCCCAGAAGAACTAGTGTTGAAGAAGATGAGGAACTAGCACTTTCAGAGGAGTTTAATGAAGCACACAACAAGACACATGTGTGCGGTATATGTGGAGCAGCTTTTGAAGAACGCATTCAATTGATTAAACACACAAGGCTTTACAACCATGAAACACTGTTGAAATGTGATCACTGTGACAAGAGtttTCATTTGGTTGATTCTTTTCGTAAGCATATACGCATACACACTGGCGAGAAGCCgttcaaatgcaaatattgtgcAGAGGCTTTTTCTCATAACACAACATACGCCCGACATCTCCAAACGCATCTTGGTGAGGAAATATACTTATGTGAGCTTTGTCCACGTGGATTTCAGAAATCCTCTGAACTGCGTAAGCACTATGCGGAACATAAAAATGAAGATGCGGAGACACGTAGAAGAAATATTGCTGCGCTGCAAGCAAAGGCCGCTGAATTGAagctaaatttgaaaatatcaaCAGCAGTCAAAGAAGTCGAAATGGTTGCCGACGATGAAGATTCCGCTACAATGCCTTTGAATACGGTGATCATTAAAGAAGAATTGGATTTGGATGATATTGTATGGTCGGCGGACGAAAGCTCGCATGATACAAAATCCGCATCAGATGACGTCAAACCAACAATTAATTATAACAAACCAATAAAGCAAGAACTTTCTGATGAATCAAATGAAGCAGAGTGCACATATCAGTGCGAGTGCAAAATAAACTTTGCAAATGTTGAAGAATTAGAAGGACACATGTTGCAACACGACCACAAGGAACGTTTTCAGTGTCGCATTTGTACCAAGTTTTTTCCGGCCAAGCGCATACTTGCAAAGCATATGCTTATGCACAGTGAGGCACATGTCTGTGACATATGTGGTGAAGCATTTAACGGACGTGAGCAGTTGCGCGAACACTCAAAGCTATATAACCATGCAAAAGTGCTCAAATGTGTACACTGTGACAAAAGTTTTCATTTGGCTTATTCTCTGCGTAAACATATGCGCTTACACACTGGCGAGAAGCcgtacaaatgtaaatattgtgaAGAGGCTTTTTCGCATAATACCACATACGCCAGACACCTCCAAACACATCTTGGCGAAGAAATTTATGTTTGCGATCTTTGTCCAAGgggttttcaaaaaaattcgGAACTGAAAAAACACTATGCGGAGCATAAAAATGAGGATAGTGAGACACGCACAAAAAATCTAACCGCGCTGCAAGAAAAAGCGgagaaattaaaactaaatttgtcaATATCAGCTGTGGCAGAAGTTAAccagttaaaagaaaaattatataaatgtgaTCTCTGCGAAAAGTGctCCACTAGTAAAAGAAGTTTAATCATTCACATGCGTACACATACTGGCGAGCAACCATATCAATGTAAATACTGCGAACAGTCCTTTAAGCAAAGTACAAACTACACCAGGCATCTCAGAAACCATCTTGGCTTTGAAATTCATATTTGTGAACTTTGTCCGCGTGGCTTTCAAACgtatttagaattaaaaaaacattatccAGAACATAAAAATGATGACGAAGAAACTAGACAACTAAATTTAGCTGCACTGCAAAAGAAAGAAGAGGAAGTGAAACAAAGGCTGAAAACTTCGCAAGCGTCGTCGGAAGTTAAccaatggaaagaaaaattgtacaaatgtGAAATCTGCGATTTGCGtTACACTCGTAAACAAACTTTAACCACCCACATGCGTACACACACTGGAGAACGTCCATTCAAATGTAATCATTGTGGAATGGGTTTTACGCAAAGTTACAATTACCACCGGCATCTCAAAACACATATTGGCAATGAAATTTACAAATGTAAATTTTGTCCACGTGGCTTTCGAAGAACCAATGAATTAAAGAAGCACTATATCGTACATAAAAATGAGGATGCTGAGACACGCGAGAGAAATATAGCTGCGTTGCAAGCAAAAGAAGCTGATTTGGTGCTAATATTGAAACCCTCGCCAACGTCGACAGAAGGTATTTAA
Protein Sequence
MELSDNDDDSANMLTDTVIVKEELDLEDIVWPDELCSNDTFRTSSVMNDVKPRRTSVEEDEELALSEEFNEAHNKTHVCGICGAAFEERIQLIKHTRLYNHETLLKCDHCDKSFHLVDSFRKHIRIHTGEKPFKCKYCAEAFSHNTTYARHLQTHLGEEIYLCELCPRGFQKSSELRKHYAEHKNEDAETRRRNIAALQAKAAELKLNLKISTAVKEVEMVADDEDSATMPLNTVIIKEELDLDDIVWSADESSHDTKSASDDVKPTINYNKPIKQELSDESNEAECTYQCECKINFANVEELEGHMLQHDHKERFQCRICTKFFPAKRILAKHMLMHSEAHVCDICGEAFNGREQLREHSKLYNHAKVLKCVHCDKSFHLAYSLRKHMRLHTGEKPYKCKYCEEAFSHNTTYARHLQTHLGEEIYVCDLCPRGFQKNSELKKHYAEHKNEDSETRTKNLTALQEKAEKLKLNLSISAVAEVNQLKEKLYKCDLCEKCSTSKRSLIIHMRTHTGEQPYQCKYCEQSFKQSTNYTRHLRNHLGFEIHICELCPRGFQTYLELKKHYPEHKNDDEETRQLNLAALQKKEEEVKQRLKTSQASSEVNQWKEKLYKCEICDLRYTRKQTLTTHMRTHTGERPFKCNHCGMGFTQSYNYHRHLKTHIGNEIYKCKFCPRGFRRTNELKKHYIVHKNEDAETRERNIAALQAKEADLVLILKPSPTSTEGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-