Lmac015467.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophenga maculata
Gene Symbol
-
Assembly
GCA_035044805.1
Location
JAWNNP010002956.1:2351460-2357951[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 6.8e-07 4.2e-05 24.1 4.9 1 23 114 136 114 136 0.98
2 15 3.4e-06 0.00021 21.9 1.8 1 23 142 164 142 164 0.99
3 15 6.3e-08 3.9e-06 27.3 1.9 1 23 170 192 170 192 0.98
4 15 0.0012 0.073 13.9 1.6 1 19 198 216 198 220 0.90
5 15 0.00012 0.0077 16.9 2.3 1 23 260 282 260 282 0.98
6 15 4.8e-05 0.003 18.2 6.2 1 23 288 310 288 310 0.99
7 15 3e-07 1.9e-05 25.2 3.7 1 23 316 338 316 338 0.99
8 15 0.001 0.062 14.1 2.4 1 19 344 362 344 366 0.94
9 15 3.4e-05 0.0021 18.7 5.6 1 23 408 430 408 430 0.99
10 15 0.015 0.91 10.4 0.7 9 23 550 564 548 564 0.94
11 15 8.8e-08 5.4e-06 26.9 2.7 1 23 570 592 570 592 0.99
12 15 0.00061 0.037 14.8 0.1 1 23 598 620 598 620 0.96
13 15 6.5e-05 0.004 17.8 3.9 1 23 653 675 653 675 0.98
14 15 0.0023 0.14 12.9 0.4 1 23 681 703 681 703 0.98
15 15 0.00068 0.042 14.6 0.1 1 23 709 731 709 731 0.94

Sequence Information

Coding Sequence
ATGCGACAACTAATGGAGTTTCAAGTTAAAAATCAGAACCAAACTGTTGATGCTACATCTATGGTGACTAATAAAACTATAGTTAAAGAAGAGTTCGAGTGCCAGGAAAGCAGCGAATGGCTGGAAATAAAAAAGCAATCAATTAATTTAGAACCAATGACAGAGAATGATTGTAGAACAGAAATTTATAGCGCAACAGCAGACAGCTGCTCCGAAATGAAAGTTATGAATGAACCATTGACTGATGATGATAATGCTGTGTCAGAGAACagaataataaaactaacaaacagTACTAGTACGGATGATAAAAACAATGAGTGCGACGAAATCAAACTGCACCAATGTGATATCTGCAACAAGCGtttcacTATGAAGTCCTATTTACTTAGACACATGCGTAAACACACCGGTGAGAAACCCTTTAAGTGTGATTTGTGCGACGTAAGaTGCAGTCAGAAAGTTAATTTGCTTGCGCACATGAGAACACACACTGGTGAAAAGCCGTACAAATGTGAATATTGCGATCGTGCCTTCACACAATATTCTAATTTAATCAGGCATCGTCGTTTGCATTTTGAGGATAATGTCTTTCCGTGTCAACTTTGCCAAGGCAGTTTTCGTACAAATTCAGAACTTCAAAGACATTGTGCGGTACATAAAGATGAAGCAGATAACGAACCAGAGCACCACTTAAAGACAAAAGGCTTCAGTGACAATTCCAGAATAACAGCTAGAACTAATAGAAGAAAACGTCAAAGCACGGTGAATAAACCGCACAAGTGTGACATCTGCTACATGCgtttcgcTTTAAACGCTTATTTGCTTAGACATATGCGAAAACACACTGGTGAGAAGCCATTTAAATGTGATTTGTGCGATGTAAGATGCAGTCAGAAAGGACATTTACATGCACACATGCGTACACACACTGGTGAAAAGCCGTACCGGTGTGAACATTGCCAACGTGCCTTCACACAATTCTCCAATTTAAACAGGCATCTTCGAGTGCATCTTGGCAATAATGTCTTCACGTGTCAAGTTTGCCTACGCAGTTTTCGTTCGAACTCAGAACTGCAAAACCACTGTGCGGAACACAAAGATGAGTATACTGAGACCAGAGCAGAACAACAACCTGCAAGACAAGAAAAAGTTATCGAACAGGTGCAACAATTAAAAAGCAAACATTCGCATATGCGCGAACACAATGATGAAAAGCCATTTAAGTGTGATTTTTGTGATGTAAgaTGCAGTCAAAAAGTGCATTTGCGTGTTCACATGCGTACACATACTGGTGAAAAGCCGTACAAGTATGCATCAATGATGTGCAATGAGACAATAGTTAAACAAGAGTTAGAGTTCCAGGAAGAGTTGGTGGTAGAGGAATGGCGAGATGATTCATTAACCATACCAATAATTAAACAGGAGTCAATGGCAGAAAATGATTTTGATGCAGATGCAACTAACGCAACACAACAATCGGCAAACTTGTGCTCCGAATTGAATATTGTGAACGAACCATTGAATGAAGATGATTCTTTGTTAAAAAAACTGGACAGATTAAGTTCAAGTGCTTCAAATTCAACAACAGTAGATAGCAATGTAGAAAGTGATAATATATACGAGCAAACAAAAGACTCGCCAAACTCTTGCAGTCAGAACTATCATTTGCGTATTCACATGCGTACACACACTGGTGAAAAGCCGTACAAGTGTGAATATTGCGATCGTGCATTTGCACGTAATTCGCATTTAAACAGGCATCGTCAAGTGCATCTTGGCGATAATATTTATACGTGTGAACTTTGTCCAGGTAGTTTTCCGTCAAACGCAGAACTACAAACGCACTACGAAGAACACAAAGATGAAGATGCTGAGACCAGAGAAAGAAATCTGGTTGAACGAAAAGCATATCATTTAAGTATGCAGAAAAGGAATTATCCTAAGGAAAAACCACACGAGTGCGACCAGTGCAATAAACGTTTCGCTACAAAACAGCAATTTGATCTTCACATGCGACGACACACTGGTGAAAGGAAGTACAACTGCAAATATTGTGAGTATGCCGCAGTAGAGCTTACCACTTTAACCAGACATCTCCGTATGCATCTTGGCGATGAAGTCTATCTATGCGAACTGTGCCCTCGTGGTTTTCGCTTAGCCTCCGATCTGCGAAATCATCGTATAGAACACAATAATGAGAACGCTGAGACcagagaaagaaatttagctgcaagaaaattaaaagatgcTGAACTACAGCTTAAGTCGAACACTTCAGCAGTGACTGCTTAA
Protein Sequence
MRQLMEFQVKNQNQTVDATSMVTNKTIVKEEFECQESSEWLEIKKQSINLEPMTENDCRTEIYSATADSCSEMKVMNEPLTDDDNAVSENRIIKLTNSTSTDDKNNECDEIKLHQCDICNKRFTMKSYLLRHMRKHTGEKPFKCDLCDVRCSQKVNLLAHMRTHTGEKPYKCEYCDRAFTQYSNLIRHRRLHFEDNVFPCQLCQGSFRTNSELQRHCAVHKDEADNEPEHHLKTKGFSDNSRITARTNRRKRQSTVNKPHKCDICYMRFALNAYLLRHMRKHTGEKPFKCDLCDVRCSQKGHLHAHMRTHTGEKPYRCEHCQRAFTQFSNLNRHLRVHLGNNVFTCQVCLRSFRSNSELQNHCAEHKDEYTETRAEQQPARQEKVIEQVQQLKSKHSHMREHNDEKPFKCDFCDVRCSQKVHLRVHMRTHTGEKPYKYASMMCNETIVKQELEFQEELVVEEWRDDSLTIPIIKQESMAENDFDADATNATQQSANLCSELNIVNEPLNEDDSLLKKLDRLSSSASNSTTVDSNVESDNIYEQTKDSPNSCSQNYHLRIHMRTHTGEKPYKCEYCDRAFARNSHLNRHRQVHLGDNIYTCELCPGSFPSNAELQTHYEEHKDEDAETRERNLVERKAYHLSMQKRNYPKEKPHECDQCNKRFATKQQFDLHMRRHTGERKYNCKYCEYAAVELTTLTRHLRMHLGDEVYLCELCPRGFRLASDLRNHRIEHNNENAETRERNLAARKLKDAELQLKSNTSAVTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-