Lmac015854.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- zfh1
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010002993.1:1510794-1521849[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.4e-05 0.0021 18.7 0.3 1 23 71 93 71 93 0.92 2 17 4e-06 0.00025 21.7 5.7 1 23 99 122 99 122 0.95 3 17 2.4e-07 1.5e-05 25.5 2.5 1 23 128 150 128 150 0.98 4 17 0.0006 0.037 14.8 4.5 1 23 156 178 156 178 0.98 5 17 0.0011 0.069 14.0 0.9 1 23 184 206 184 206 0.96 6 17 0.00066 0.041 14.7 3.1 2 23 245 267 244 267 0.97 7 17 1.9e-06 0.00012 22.6 3.3 1 23 273 295 273 295 0.97 8 17 1.7e-07 1.1e-05 26.0 1.7 1 23 313 335 313 335 0.99 9 17 2.2e-07 1.4e-05 25.6 1.1 1 23 437 459 437 459 0.97 10 17 0.00077 0.047 14.5 1.3 1 23 465 488 465 488 0.97 11 17 0.00012 0.0076 17.0 6.3 1 23 494 516 494 516 0.96 12 17 1.1e-05 0.00068 20.3 6.1 1 23 522 544 522 544 0.99 13 17 0.0043 0.27 12.1 0.3 1 23 550 572 550 572 0.96 14 17 5e-06 0.00031 21.3 2.4 1 23 631 653 631 653 0.97 15 17 0.0013 0.078 13.8 5.9 1 23 659 681 659 681 0.99 16 17 0.00011 0.0069 17.1 0.1 1 23 746 768 746 768 0.98 17 17 1e-07 6.2e-06 26.7 1.5 1 23 774 797 774 797 0.98
Sequence Information
- Coding Sequence
- ATGCATGGATTAGTGCGCTGCCGGCTTGAAGCCGGCTACATCTTGGAAACCAACAATGAAGCTATACATCAAACCGCAGTAAATAAAACGGAATTAGATGCATGGGATGAGCAGGAAGTTGAAACTATAAATCAAAACGATACAGAATATGAATCAGATGAAAGCAATACATCCAGCAATAATGAAGTAAAGCCGAATTGCGTGGGACGTTTCGATTGTCCCATATGTCCAAAGGACTTTGCTAGACGACGTTATCTGAAGATTCATATGTGGACCCATAGTGatacgaaaaactttttatgcaaaGTCTGTAATAAAGCATATAAACACAAACATAACCTAAACAATCATATGAGAACCGAGCATGGTACGGCACGACCATATAAGTGTGATCAATGTGACAAGAatttctcACGTTCGGATAATCTGCAAAGACACAAACAACTACACACCGGTGAAAGGCCATACAAATGTAACTACTGTACCCGAACTTTCAAACGATGCTACGTGCTTCTTGACCATCTGGGAACGCATCTCGGTGATGAAATTCATATTTGTAAACTATGTCCAGAAAACTTTCGTACTGCTATGGAGTTGCAAGGACATTATACGACACACAAAAATGAGAATGCCGATACTCGAAAGAGAAATATAGCTGCTCGAAAGGAAAAAGATGCTCAAGTCGTACTAAAGTCGAAGAAGGCTGATGAAGAAACtgaaaattcaaatcaaaaatgCAAACTGTGTGGATTAGAGTTTGACTATGAAAACAAACTTAAGACTCATATGAGAATGTGTCACAATGAGATTCAACGGTACAATTGTGATCAATGTGACAAGAGtTACACTAGTTCGAGTCATCTGCAAAGACACAAACTAGTACACACCCGCACCGATGAGAAGCCATTGAAAATTGTTCACAATGAGACTCCAATATACAAATGTGAAGAATGTGACAAGAGtttcagtCTGTCACAAAATCTGCAAAGACACAAACGAGTACACACCGGTGAGAAGCCCTTCAAATGCAAATACTGCGAAGGAAGCGTGTTGGGTCCAGTTCTAAACAGCAATAATGTTGAggtagcaacttatgctgatgatactgcCATCATTGCCATGAGCAAATTGACCAATGAAGATTTAAATCAAACCGCAgtaaataaaaaggaattagATGCATGGACTGAGCAGGATATATCACTGGAACCACTAGAAGTAGAAACTAATCAAATCAATATAGAATATGTAGCAGATGAAAGCAATACAGCCAGCCAGAATGAAGTACAGCCGAACCACGAAGGGCGTTTCGATTGTCCCATATGTCCAAAGGATTTTGCAACCCGGCACAATCTGAAGAGTCACATGTTGACCCATAGTGATGCAAAAAACTTTGTGTGCAATGTCTGTTATAAAGCGTATAAATTCAAACGTAGCCTAGAAATTCACAACAAAACGGAACATGGTACATCCCAACGACATAATTGTGATCAATGTGACAAGAGcTTTGTTCGATCAGAGTGTCTACGCAAGCACAAACGACTACACACGGATGAAAGACCATACAAGTGTAAATACTGTTCCCGAACTTTCAGACATGCCAGCAATTTTTATGACCATCTGCGATCGCATCTCGGTGATGAAATTCATATTTGTAATCTATGTCCAGCAAACTTCCCTTATGCTGTGGACTTGCAAAATCATTATACGTCACACAAAAATGAGGATGCAGATACTCGAAAGAGAAATTTAGCTGCTCGACAGGAGAAAGAAGCTCAAGTCGTACTAAAGTGGAAAATCGATCAACaatacAAACTGAGTGGTTTAGAATTTGACTGTGAAACAAATCCTAAGACTCATATGACAATGCTTCACACTGAGATTTCACGATTCAAATGTGATCAATGTGGCAAGAGtacCTCTACTCGCCGAAATCTTAACAGACACAAACTGTTACACACCGGTGAGAAGCCATTCAAGTGCAAATACTGCGATGCATCTTGCAACCTACTATACAATCTCCATTCGCACCTTCGAACGCATCTCGGTGATAAAACGCATGAATTGACCAATGAAGGTATAAATCGAAACACAGTAAAAAAACAGGAATTAGATGAGCAGGATATACCACTGGAACCACTAGAAGTAGAAACTAATCAAATCAATATAGAATATGTAGCAGATGAAAGCAATACAGCCAGCCAGAATGAAGTACAGCCGAACCACGAAGGGCGTTTCGAATGTCCCATATGTCCAAATGATTTTGCATATCGGAACTATCTGAAGGATCACATATTGACGCATAATGATACGAAAAACTTTGTGTGCAAAGTCTGTAATAAAGCGTACAAACAGAATCGTAATCTAACCAATCACATGAGAACGGAACATGGTACATCACAGCGACATAAATGTGATCAATGTGACAAGAGGTAA
- Protein Sequence
- MHGLVRCRLEAGYILETNNEAIHQTAVNKTELDAWDEQEVETINQNDTEYESDESNTSSNNEVKPNCVGRFDCPICPKDFARRRYLKIHMWTHSDTKNFLCKVCNKAYKHKHNLNNHMRTEHGTARPYKCDQCDKNFSRSDNLQRHKQLHTGERPYKCNYCTRTFKRCYVLLDHLGTHLGDEIHICKLCPENFRTAMELQGHYTTHKNENADTRKRNIAARKEKDAQVVLKSKKADEETENSNQKCKLCGLEFDYENKLKTHMRMCHNEIQRYNCDQCDKSYTSSSHLQRHKLVHTRTDEKPLKIVHNETPIYKCEECDKSFSLSQNLQRHKRVHTGEKPFKCKYCEGSVLGPVLNSNNVEVATYADDTAIIAMSKLTNEDLNQTAVNKKELDAWTEQDISLEPLEVETNQINIEYVADESNTASQNEVQPNHEGRFDCPICPKDFATRHNLKSHMLTHSDAKNFVCNVCYKAYKFKRSLEIHNKTEHGTSQRHNCDQCDKSFVRSECLRKHKRLHTDERPYKCKYCSRTFRHASNFYDHLRSHLGDEIHICNLCPANFPYAVDLQNHYTSHKNEDADTRKRNLAARQEKEAQVVLKWKIDQQYKLSGLEFDCETNPKTHMTMLHTEISRFKCDQCGKSTSTRRNLNRHKLLHTGEKPFKCKYCDASCNLLYNLHSHLRTHLGDKTHELTNEGINRNTVKKQELDEQDIPLEPLEVETNQINIEYVADESNTASQNEVQPNHEGRFECPICPNDFAYRNYLKDHILTHNDTKNFVCKVCNKAYKQNRNLTNHMRTEHGTSQRHKCDQCDKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -