Lmac013499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucophenga maculata
Gene Symbol
-
Assembly
GCA_035044805.1
Location
JAWNNP010002510.1:48417-57220[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 1.3e-05 0.00081 20.0 3.1 3 23 62 82 60 82 0.97
2 26 0.0021 0.13 13.1 1.6 1 23 88 110 88 110 0.98
3 26 0.001 0.063 14.1 1.3 1 23 116 138 116 138 0.95
4 26 9.7e-06 0.0006 20.4 1.1 1 23 144 166 144 166 0.97
5 26 2.8e-06 0.00018 22.1 0.6 1 23 172 194 172 194 0.99
6 26 0.061 3.8 8.5 0.3 1 20 200 219 200 222 0.95
7 26 4.4e-05 0.0027 18.4 1.8 1 23 391 413 391 413 0.97
8 26 1.8e-06 0.00011 22.7 5.2 1 23 468 490 468 490 0.98
9 26 0.0049 0.3 11.9 6.2 1 23 497 520 497 520 0.94
10 26 7.2e-07 4.4e-05 24.0 0.3 2 23 620 641 619 641 0.96
11 26 3.1e-05 0.0019 18.8 0.7 1 23 648 671 648 671 0.96
12 26 0.091 5.6 7.9 0.0 1 23 687 709 687 709 0.95
13 26 0.013 0.77 10.6 1.8 2 22 727 747 726 750 0.88
14 26 0.0015 0.096 13.5 1.0 1 20 761 780 761 783 0.96
15 26 0.00012 0.0071 17.1 1.0 1 23 789 811 789 811 0.96
16 26 7.2e-07 4.5e-05 24.0 0.5 1 23 817 839 817 839 0.98
17 26 0.013 0.83 10.6 5.3 1 23 845 867 845 867 0.96
18 26 8.6e-06 0.00053 20.6 4.1 1 23 873 895 873 895 0.98
19 26 4.5e-05 0.0028 18.3 2.7 1 23 901 923 901 923 0.99
20 26 0.69 42 5.2 0.1 1 11 929 939 929 942 0.91
21 26 0.00016 0.0096 16.6 0.3 1 23 1020 1042 1020 1042 0.95
22 26 7.5e-06 0.00046 20.8 0.1 1 23 1048 1070 1048 1070 0.98
23 26 0.00031 0.019 15.7 1.4 1 23 1076 1098 1076 1098 0.95
24 26 3.8e-05 0.0023 18.6 3.9 1 23 1104 1126 1104 1126 0.98
25 26 5.2e-08 3.2e-06 27.6 0.6 1 23 1132 1154 1132 1154 0.99
26 26 9.9e-05 0.0061 17.3 0.5 1 23 1160 1182 1160 1182 0.96

Sequence Information

Coding Sequence
ATGGAAGATACGGAAACAAAACTAGTAAATGATGACTTCGAATTTGAAAAACCTGATCAGTCTATGGAAATGGCAACGAGCGACAAAGATGAAGAGGACTACGAATCTGACGAAGCGGAAGAGTCAGAAGATGATGCACTTGATACCAGAAAAGAAACGCCTAAATCCAACGAACCAATTGCTTGTAAAGTATGTGGCAAAACTTTTTCGAGTCATCGCTATTTGAGACGCCATGAAAAGCGACACACTAGCGAACGTCGCTTTGTTTGCCCCACTTGTCCACTGACATTTACATGTCGAGCAGATCTGCTACATCATATCGAAACCCACAGCggaataaagaaatttttgtgcgATATCTGCGGGAAAGGGTTTGGCACAGCTCATGCGATGAAGACTCATAAAAAGTACCATAGTAATGAGAAACCGTTTGCATGCGAGCAGTGCAGCATGAGGTTTGTTCGGAGCGATACATTGCGCACCCATATGCGATCACACACTGGCGAAAAACCGTATAAATGTTTATACTGCGAGCGGCCTTTTGCTCAAAGTACCGATCTGATAAAGCATTTGCGAATGCATCTTGGCGAAGAAGTCTATAATTGCGACTTTTGTGCACGTGGCTTTCGGTTGGCAACTGAACTGAGAAAACACCTTCCTGAACATAAAAATGAAGATGAAGCTaccagagaaagaaatatagcaGAACGACAAGAGAAAGAGGCCAGATTAAATTTGAAGTTATATAGTTTTCCAGTGCAGGCTGAAGGAACGAGAGAACTTGGACATTTAAAGAAATCAATGTACAAAGACtctaaacaaatagaaaaagatCAAACTGATACATTTATATTGGTTGAAGCTACAGATGGAGTAGTTGGCGAAGAAAATATGATGGACGAGAATGAAAGGGTAGAAACTATAGAAAATGCTAATAGGAAAACAGAATATGCGGATGGTTCACATgacaaactaattaaattagaaaTCAATGTATTGTCAAACTTTGCTGAACTGAACAAATCTAATGACCAGCCTATGAAATCAAATCCGTGCAACGAGAATGACAAGGAATACGATTCCGAGGAATCCAAAGAGTATGTAGAGgaaattgaaatcgaaacaCTAACATTtCGAAAATCTTATGCACGAGCCGTAAAGCAAAAGAACTTTCCATGTACGAAATGTGATAAAACCTTCCGCGAAGCATGTAAACTGGAGCGACATTTGATAATTCACAAAAAAGGGTCCATTGCAGAAAAGCAGCAGGAACATACTGAACTAGAAATATCTGAAAATCCAGAGCAGCCTGCCGAAACAAAACCatctaataaattaaaagagcTTGGAAAAGGCAAGGAGAAAGGTGAAACAATAGAAACAGCGTCAACACCTAAGAAACATCAATGTACGTCATGTGGAAAGTGTTTTCCGAAAGCGTACAATTTGCGGCGGCATATGAAAGTTCACACCACTGAAACACATCCCCACGTATGTAAAGAATGTGGCTGCTGCTATGAAAAAAAGGAGCAACTAAAACGGCACGAAATTAAGGAACATAGTTCAGAATCACCTTTCATCAATGACAGCACTAGTTCCGATGATAGTTTTTTTACTGATGATTTGCCAAAGAACAAAGTACAAAAAGGATCACCAGCAGCTACCGAATTGGAGTTTGCCGGCGAAAAGTGTTCTGAGGAGTCTGACCAGTCTGTCGAATCGGAACCGGAGAACGAAGAATTCCTTACGGTCGAACTAGATGAATTTGAAGTAGATGAATTGAAATATGAGTTAGAAGAAACGCCGAACATTTATGCGGAGGCTACACCAGAAATCATTCAAACCAAGATTCCATCACCATGCACGATATGTGGAAAGTCTTTTCCAACTTCGGTGAAATTGCGACGGCATATGACTGTACATAAAGCTGATAATCGGCCTTTCGTTTGTTCGAAATGTGGCTATCGTTTTGCTCAATTGGAAAAACTTAAAGCACATATAACTAAGCAACACTTTATAGCTTCAACTAGCATAAACGACAACACAAGTTCCAATGGTTTCTCCTGCGATGAGTGTTCATTTGTTCTTAATAATGCCGATGCATTGGTAATACATAAAGCGCAACATGTTGCGCTGTCTGCTACCGAACCGAAGTTGGCAGCAGAAGCACTCAAGTGCTGTTGCGAACAGTGTGGCAAAGTTTTTGAAACGATGGTTATGCTTGCGAATCACAGGACTATAGTGTCTCATAGCAAGCACAATAATCCTCTTAATACCTGCTATATGTGtagctactgcagaaaagagtTCCAGAATTCTCGCAGTCTCACAAGTCATATTTGGGAACACGTAGGGGAACAACGTTTTCTGTGCTCTGAATGTGGTAAAAACCTAAAAACCGCTAGTCGACTAAAAGATCACCTACGGCGACACAGCCGTGTGCTTAAATTTGAATGTTCTGATTGTCCGAAAAGCTTTTCAACTCGAAGTGGTCTGGCTAACCACAAGCTTACACACAGCGGTGTAAAGAAACATGTATGCGAACTCTGTGGCGCCGCGTTTCATAATGCCAATCATTTGAAAACACACACAATGCACCACAATCAAGAAAAACCACACAAATGCGATTACTGCAACAAACGGTTTGTTCGTGTTGATTCTTTGCGCACCCATTTGCGGAGACACACTGGCGATAAGCCATATAAGTGTAGATATTGCGAGCGTGCCTTTCCCCGTTGTGGCGATCTTGTAAAACATACGCGATCGCATATTGGCGAAGAGGTATACACCTGCGATCTGTGTCCAAAGGGCTTTCGTGTTGCAGTCACAGACGATGATAATTTGGAGTCCACTGATAATGACCCATGGTCCCCAATTAATACTGTAAGTGATCCATTGATGCACGACTTTTTAAATTCGAACAATACAAGTTTCGAAAACGAGGATATTAAACCGGCTGTCGTTATGGATTATGGGAATAGTGATATAGAAGATGAGATAACAAAACAAACACTCAACCCACTCTTAGCTGCACGACTATATGAATATCAAAAGACATTTTTGTGTAATGAGTGTGGAAATTCATTTGTCACCTCCACTGCATTGAGAGATCACCAACTGCAACACAATGAAGAAGAGCGCTTTGAGTGCAACATTTGTCCCAAATGGTTTATCCGCTCCAGTGATCTGGCCAGACATATTTTAACTCACAGTGGGGAAAAGAAACATGTTTGCGCAGTCTGTGGTGCAGCTTTTAAACATCCGTCTGGATTGATTAGACACAAACTGCATCACAGTCAAGAAAGACCGCACAAGTGTGATCATTGTGAAATGCGTTTCGATTTACCCGAAAATTTACGCCGCCATTTGCGAACACACACTGGCGAGAAACCTTACCAATGCAAGTACTGTGACCGGGCGTTTGCTCAAAGTGCCAATCTTATAAAGCATCTACGTTCACACCTTGGTGATGAAGTTTATAATTGTGATCTTTGTCCTCGGGGCTTTAGTTTGTCATCCGACTTGCGCAAACACTACATGGATCATAAACATGATGATGCTGATACTCGAGAAAGAAATCTAGCCGCACGACGAGAAAAAGAGTCGACACTGCAGCTAAAGTTGTCCAATTTGCCAAGGCTAGTCGATGGTAGTGATAGCTCCTGA
Protein Sequence
MEDTETKLVNDDFEFEKPDQSMEMATSDKDEEDYESDEAEESEDDALDTRKETPKSNEPIACKVCGKTFSSHRYLRRHEKRHTSERRFVCPTCPLTFTCRADLLHHIETHSGIKKFLCDICGKGFGTAHAMKTHKKYHSNEKPFACEQCSMRFVRSDTLRTHMRSHTGEKPYKCLYCERPFAQSTDLIKHLRMHLGEEVYNCDFCARGFRLATELRKHLPEHKNEDEATRERNIAERQEKEARLNLKLYSFPVQAEGTRELGHLKKSMYKDSKQIEKDQTDTFILVEATDGVVGEENMMDENERVETIENANRKTEYADGSHDKLIKLEINVLSNFAELNKSNDQPMKSNPCNENDKEYDSEESKEYVEEIEIETLTFRKSYARAVKQKNFPCTKCDKTFREACKLERHLIIHKKGSIAEKQQEHTELEISENPEQPAETKPSNKLKELGKGKEKGETIETASTPKKHQCTSCGKCFPKAYNLRRHMKVHTTETHPHVCKECGCCYEKKEQLKRHEIKEHSSESPFINDSTSSDDSFFTDDLPKNKVQKGSPAATELEFAGEKCSEESDQSVESEPENEEFLTVELDEFEVDELKYELEETPNIYAEATPEIIQTKIPSPCTICGKSFPTSVKLRRHMTVHKADNRPFVCSKCGYRFAQLEKLKAHITKQHFIASTSINDNTSSNGFSCDECSFVLNNADALVIHKAQHVALSATEPKLAAEALKCCCEQCGKVFETMVMLANHRTIVSHSKHNNPLNTCYMCSYCRKEFQNSRSLTSHIWEHVGEQRFLCSECGKNLKTASRLKDHLRRHSRVLKFECSDCPKSFSTRSGLANHKLTHSGVKKHVCELCGAAFHNANHLKTHTMHHNQEKPHKCDYCNKRFVRVDSLRTHLRRHTGDKPYKCRYCERAFPRCGDLVKHTRSHIGEEVYTCDLCPKGFRVAVTDDDNLESTDNDPWSPINTVSDPLMHDFLNSNNTSFENEDIKPAVVMDYGNSDIEDEITKQTLNPLLAARLYEYQKTFLCNECGNSFVTSTALRDHQLQHNEEERFECNICPKWFIRSSDLARHILTHSGEKKHVCAVCGAAFKHPSGLIRHKLHHSQERPHKCDHCEMRFDLPENLRRHLRTHTGEKPYQCKYCDRAFAQSANLIKHLRSHLGDEVYNCDLCPRGFSLSSDLRKHYMDHKHDDADTRERNLAARREKESTLQLKLSNLPRLVDGSDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-