Basic Information

Gene Symbol
ct_1
Assembly
GCA_035044805.1
Location
JAWNNP010003230.1:263435-321300[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 7.1e-27 7.9e-23 80.6 0.0 3 72 1180 1250 1178 1255 0.95
2 3 7e-32 7.9e-28 96.6 0.0 3 77 1642 1717 1640 1719 0.96
3 3 4.1e-31 4.6e-27 94.2 0.0 3 77 1913 1988 1911 1990 0.96

Sequence Information

Coding Sequence
ATGATTCGACATTCTGCTGTAGTCGAGTTGTTGTTGAGAGCAACTTTAGCCGAAAAGGAAGTTAATACACTTAAGGAACAACTTTCAACAaatacaccaacaacaacaacagccacaggAGCAACAGTAGCAGGTACAAAAGCAGAAATAAACGAAGACGAAGAAGATACGTGTGCCGACGGAGCAACAGcattagcaacaacagcaaacgatATTGCTATCCCACCAACAGCAAGCACATTGCTATCACCaatacacagcaacaacaacaacaacaacattatcgAACATATCGATACTACTTTGGATATAAGCGATAacgaaaaactattaaatagtGTCGCTGCAGCAATAACATTGCATCAAAACGGTGGTAATCtattggcagcagcagcagcggcagcaacaacaacaccctCACCATCGCCACCGCTAAGCAGTGAACATACACatcaacaccaccaccaccaccagcaccaccaacaacaacaacaacagcagcagcaacttagTACAGCGCTAAACGGCGTCAACGGTTGcctaaatacaaaattgttttttaatcacGCACAGCAAATGATGATGgaggcagcagctgctgctgccgctgctgctgcggctgcagcggctgcacaacaacaacaacagcaatcgcCAATGCAttcaccaacaacagcagcagcagcagtagtaagTGAGCAACAAacagccacagcaacagcagcaacaagaattgcaacaagaaaaactgctgcagcagcagcagcagcaaaatcagGAGCTGAACAGCAACATAAacgtgcaacagcaacagttgatgatgaagatgatgaagatgCTGATGAACGTATAGCAGCACAACATGTTGTTGATgacgatgaagatgaagatATGCAGCAACATCATAATGCAACAAATGCTAATGATCTAACACATAATGATATTGATTAtcacgatgatgatgatgacgatgatgatgatgctgatgctgaagACGATGATATGTTGGCAAATGTTGCTGTTAGCGAAAGAACTGATGTTGATAATGAAACTAGCTTAAATATTAAAGCACTTTTGGAGGAGGTACAACGCTTGCGTGCACTCGAACAGACACACATTGTACAAATCCATCGACTCGAAGAGCATCTGGAGGTTAAGCGACAGCATATAATGCGTCTGGAGGCACGTTTGGACAAACAACAGATCAATGAAGCACTAGCCGAGGCAACAGCATTAGCTGCAGCAGCGGCTACAGCAGTGGTCAGTGCCacagcgacagcaacaacaagcacaagtcttagcagcagcagcaaatcaaATGCTAGCAACATGGAGGCTGACAATGAATATGCGAACGATGAACATATTGTTGAagcagctgatgatgatgatgacgatatcagcaatgatgatgatgttgtcgctgctgttgctgctgacatTGATCAGATACAAAttgtcaataataataataataataatgctgaGCATAATGTtgcagctacagcagcagcagcagcagcagcagcagctgctgttgttgatgatgacgacgacgacgatgatgagcATAATGATTTGGTAGCAAAAGATATTGCAAGATCAGCTCTTGTGCTCAGtgccaataataataaaatgtgcatcgatgatgatgatgatgacgatgcaGCTGTCTCAGATACAGAAGCAACTATTAGACAAAATGTTGCtacttcaaacaacaacaacaacaacaatgatgaaacTGCTATTGAAGAGGATGTTGAAGATTTACATATTGCCGATATCAAAAAGGAGAACCACAGCCCACTCGATTTGGATGTCATTAGTCAGCAATcagccattgctgctgctgctgcagcggctgccGCTGTCTGTGCCAATGATCCGAATAAATTTCAGGAATTACTATTGGAACGCACAAAGGCTTTTGCCGCTGAGGCGCTTAAATGTAGCGGCAATAGCAGCGATAATAGCGAAGAAACGTCAACgacagctacagcagcagcaacacctgcaacaacaacagcaacatcttCAGCAACACCAACCGCCGCAGCGACAGCAAACGCCGCAGCAACTGcaaacaatgaaacaaaaaatgatgTTGTTGCTAATAAATGTagcgacagcaacagcagtcaacaacaacagcaacaacaacagcaaaatgttGTTTTCAATGCCAATGAATTGCcaaaaataccaaatattaaaatcgaagctgatgacgatgatgaagttGATGAAAACTCTGCTGCTGTAGAGACAGAAGCTTGTGAGCAACATagtttagctgctgctgctgctgctgctgcagctaatGCTGAGGATattgaacagcagcagcagcaaatgtttGGTACATTATTAAATGAGcaatttgtcaataattattggCGACGTGGTCTTGAACAGACAGCAGCGAGTTGCAAAACgccaacaatatttcaaaatgccaatcaaaaacaacaacaacagcagcagcaacaacaacaacaacaacatttagccgtccatcagcaacaacatcatcaacagcaacagcagcatcatggctatatgcagcaacagcaacagcaagcacaacaacaacaacaatttcagcaTGCACCCTCGTCCACAACGCTGCTTAGTCAATTGGTTAATGCCACATTttctacagcaacaacaaattcaactacaaatacaacaaattgctCTTCTTCCTCATCCAATTCTTCCAACTCCTCTTCTCTACGCACAGATGGACATCatcaacaccagcaacaacaacaacaacaccaccaccaacaccatcatcatcatcaacatcatctacAGCAGCAACATGTTGGTGAAGCAGGTGATCtcaaaacagcagcagctgccgcCGTCAATTCAACGCTTGGTCTcaatcatcaacaacaacaacagcaacatcatcaccaccaacaccaacaacaacaacaacaacaacaacatcatcatcaccagcagcagcaacaccatcTACAACATCTACAACAAACACATCAGGATACTTCGTCCAGCGCTAGCACACCAAATCCATTATCAACGGGCGCAGCAGCAACGtccaatagcaacaacaaccaccaccatcaccaccacaacaacaacaacagctcgaacagcagcaacaccaccaCCGATCAGCTGACTGCTTCACTATTAGCCAACggtgctgccgctgccgctgcagcagcagctgccaaATCGCTTGCAGccgaagacaacaacaacagtctgACACCCGTTGCAGCCGCTGCAGCCATGGCAGCGCATCATGCgcatgctgctgccgctgcagcagccTTACCGCCTGGTTTTCTGCCCGGTCTACCGTTCCAatttgctgccgctgccgcttcGGCACCAGATGGACGCGGTCATTTTCGTTTTGCCGATGCTGAAATGCAATTGCCACCGGGTGCTTCAATGGCTGGACGTTTGGGTGAATCGCTAATACCGAAAGGTGATCCCATGGAGGCCAAACTGCAGGAGATGTTACGCTATAATATGGATAAGTATGCCAATCAGGCACTCGATACATTGCACATATCGCGCCGTGTACGCGAATTGTTGTCGGTGCATAATATCGGACAGCGTCTGTTTGCCAAGTATATACTTGGTCTGTCACAGGGCACCGTTTCGGAGCTGCTATCAAAGCCGAAACCATGGGACAAACTCACCGAGAAAGGACGTGACAGCTATCGCAAGATGCATGCCTGGGCGTGTGATGATAACGCGGTGATGCTGCTCAAGTCGCTGATACCGAAGAAAGattCTGGACTGCCACCATACGGCGGTCGCAATGAGGATTCCATGTCCGATGATCGCATTGCGCACATACTCAATGAAGCCTCGTCGCTTATGAAGGGCACAGCGCCGGGTGCCATGCAACATGAAGCACAGCAACATGCCAGACGCGCCTCGCAGCACGATGAATCACACAGCAATGAGGATTCCAAGTCACCGCCACAAACCTGCACTTCGCCGTTCTACAAGGAACAGCTgaagcaacatcagcaacataCACACGAAGCGCTGCAGCAGCAGGCGCAGCATCGTTTGCGACAGCAGGAGGATTTGGCACAGGATAAGATGGCGCGTTTATATCAGGAGATTATGTCACGTGCGCCGCGTGAGAGTCCGTTTCCAAACTTTTTGTTGTCACCGTTCTTCAGCGCTGCTGCCGCTGGTGGCATGCCTGGCAGTGCGCCTAATGCATTCCCTGCTGCCATTGCAGCTGATGAGAATATACGTCTGGCTTTTGAACGTGAAATGGCCaagttgcaacagcagcaacaacatcaacagcagcaacaacagcagcagcaacagcaacagtcgtCGCTGCCAAATTTTCCAAACTTCAGCAGCCTAATGGCATTGCAACAGCAAGTGCTTAACGGCGCACAGGATTTATCATTGACCAAGGACATCAAGGATATCAAAGTGAACGGCCAGCGTAGCTCGCTCGATCATTCACAGAACTCCATGGATGGCGTTATCATGGGCGGCGTCGGCgccaacaataacagcaacaaccaaaAGGATGCAAACAACGCCAGCGGCAATGTTAGCGTCAATGCCGATGCCGAACGTCACGGTGTCTTTCCGATGCACGTACGCAAATCGGAGAGCGGCTGCCTCACACCAGCGCCACCAGCACCGCCAACCAGTAATGCTTCCGCACAGCATACCAATTCCGCAGCAGCCAGTCCACTGAGCAATTCGATATTGCCGCCCGCGCTAAGTCAATCGGATGACTTTGCCGCCACCGCGAGTCCGCTGCAGCGCATGGCCTCCATAACCAATTCACTGATTACACAGCCACCAGTGACGCCACATCACTCACAGCCGCAACGTCCCACCAAAGCGGTGCTGCCGCCCATCACACAACAGCAGTTCGATATGTTCAACAATCTGAACACCGAGGATATTGTGCGTCGCGTCAAGGAGGCACTCTCACAGTATTCCATTTCGCAGCGTCTATTTGGCGAATCGGTGCTAGGCCTATCGCAAGGCTCCGTCTCCGATTTGCTGGCGCGCCCGAAGCCATGGCATATGCTAACGCAGAAGGGTCGTGAACCGTTCATACGCATGAAAATGTTTCTCGAGGATGAGAACGCTGTGCACAAGCTAGTGGCCAGTCAGTATAAGATTGCACCGGAGAAACTGATGCGCACCGGCAGCTACAGTGGCAGTCCACAGATACCGCAGGGTTTGGCCAATAAAATGCAAGCAGCGGCGCTGCCCATGCAGAAGATGATGAACGAACTGAAGCTACAGGAACCGGCGCAGGCGCAGCATATTATGCAACAAATGCAAGCAGCGGCTGCCATGTCGGCTGccatgcagcaacagcaacaagcacaGCATGCCGCACACGCTGCGGCCGCACaaagccaacagcagcagcaacatgcagCAGTGCATGCCGCACAAGCAGCAGCGGCCGCCgccgcagcagctgcagcacatCATCAGAATATGCTGCTCACATCGCCCGGTTTGCCGCCACAGCACGCCATTAGTCTGCCGGCAAGCAAcagcggtggtggcggcggtgctGGCGGCGTAATGGGTGGGCCTCCAGTTGGACTCGTCGGTACTCCTGGTGAGAAGAAGCCCATGCTAATGCCAGTGGTGCATACGCCACATCAGCCGAATTCTATGCGCAGCCTGCATCAGCACATGTCGCCCACCGTCTATGAGATGGCTGCACTGACACAGGATCTCGACACACACGACATAACCACCAAAATCAAAGAGGCACTGCTCGCCAATAACATTGGACAGAAGATTTTCGGCGAAGCAGTACTCGGTCTCTCACAGGGCTCCGTCTCGGAGTTGCTGAGCAAGCCGAAGCCATGGCATATGCTCTCGATTAAGGGCCGTGAACCGTTCATACGCATGCAACTGTGGCTCTCGGATGCCAACAACGTTGAACGTTTGCAGGTATTGAAGAACGAGCGTCGTGAGGCGAGCAAACGCCGTCGCTCGACGGGACCCAATCAGCAGGACAACAGCTCCGACACCTCGAGCAACGATACCAACGATTTCTATACCAGCAGTCCCGGTCCGGGCTCGGTTGGTTCATCAGTTGGCGGTGCACCGGCCAACAAGAAACAGCGAGTACTCTTCTCGGAGGAGCAAAAGGAAGCATTGCGGCTTGCCTTTGCGCTCGATCCATATCCCAATGTTGGCACCATCGAATTCCTAGCCAATGAGCTGGGTCTGGCTACACGCACCATAACCAATTGGTTCCACAACCACCGCATGCGCCTCAAGCAGCAAGTGCCGCACGGACAACCGCACGGCAGCGATGCAAATCCGATACCGAGCCGCGAGAACACCAATGCCACGCCCTTCGATCCCGTCAAGTTTCGCATGTTGCTGCAACAGCGTCTCGTTGAACTGCACAAGGAACGCATGGGACTTGGCGGTGCACCGATACCCTACCCACCGTACTTCGCTGCAGCTGCGCTGTTAGGACACAGTCTTGCCAATCTGCCAAGCGCCGCTGCAGCTGCAGGCGCTGCCgccgcagcagctgctgctgccggcgCTGGCGAAAATGAGTTGCAAGCGCTCAACCAAGCCTTCAAGGAACAAATGAGCGGACTCGATTTGTCAATGTCGACGCTGAAGCGTGAACGCACCGATGACTATGGCGACGACATGGATGCAACGAGCCACGTCAGCGACAATGAATCGCTCGAGGGTGACGAAAAATTAGCCAGCGGCGACTACAACTCAGCCATGGCTAAGTCAGCGCTAGCGGCAGCAGCATATCTGAGCAATGCAGCGCGTAGCTCACGCCGCAAACCGGCCGCACCGCAATGGGTTAATCCTGCGGGCGCAGTGGCAACGAATGCTGCGGGCTTAGCTgccgcagcagtagcagcggcagcagcagcagcggctgcgGCAGCCTCAGCCGATAACGAGCGCATCATCAATGGCGTTTGCGTCATGCAACCGTCCGAATATAGTCGCGGCGTCGGCGCCGATGCTGATGGCATTGCAGCAAATGCTGCCGTTGTAGGCGGTGTCGGCGCAGCCGATGCACACTCCGACAAGGGTGAACACGATCGCAACAGCGAAGCCGGCGAAAATGAGCATGCGCACATGGATATCGATCAGCGTTTCATGGAGCCGGAGGTGAGCATTAAGCAGGAGgaggacgatgacgacgatgagaTCAATAGCACCGCCAACGCTGCCGCCATCGTTAATCTCGGCAGCAGCGCTGCCAACGATGAGGATGCggatgcagcagcagcgctaGCGCAGAAGGAGGACAAAATCAAGGTGATCAATGAGGAGAAGTTGCGCATGGTGCGCGTGCGTCGCATGAGCACCGGCGAAGAGGAACCGGCACAACAGCCAGCGGCCGttactgcagcagcagcggcgtgGAACTATTAA
Protein Sequence
MIRHSAVVELLLRATLAEKEVNTLKEQLSTNTPTTTTATGATVAGTKAEINEDEEDTCADGATALATTANDIAIPPTASTLLSPIHSNNNNNNIIEHIDTTLDISDNEKLLNSVAAAITLHQNGGNLLAAAAAAATTTPSPSPPLSSEHTHQHHHHHQHHQQQQQQQQQLSTALNGVNGCLNTKLFFNHAQQMMMEAAAAAAAAAAAAAAAQQQQQQSPMHSPTTAAAAVVSEQQTATATAATRIATRKTAAAAAAAKSGAEQQHKRATATVDDEDDEDADERIAAQHVVDDDEDEDMQQHHNATNANDLTHNDIDYHDDDDDDDDDADAEDDDMLANVAVSERTDVDNETSLNIKALLEEVQRLRALEQTHIVQIHRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAAATAVVSATATATTSTSLSSSSKSNASNMEADNEYANDEHIVEAADDDDDDISNDDDVVAAVAADIDQIQIVNNNNNNNAEHNVAATAAAAAAAAAAVVDDDDDDDDEHNDLVAKDIARSALVLSANNNKMCIDDDDDDDAAVSDTEATIRQNVATSNNNNNNNDETAIEEDVEDLHIADIKKENHSPLDLDVISQQSAIAAAAAAAAAVCANDPNKFQELLLERTKAFAAEALKCSGNSSDNSEETSTTATAAATPATTTATSSATPTAAATANAAATANNETKNDVVANKCSDSNSSQQQQQQQQQNVVFNANELPKIPNIKIEADDDDEVDENSAAVETEACEQHSLAAAAAAAAANAEDIEQQQQQMFGTLLNEQFVNNYWRRGLEQTAASCKTPTIFQNANQKQQQQQQQQQQQQHLAVHQQQHHQQQQQHHGYMQQQQQQAQQQQQFQHAPSSTTLLSQLVNATFSTATTNSTTNTTNCSSSSSNSSNSSSLRTDGHHQHQQQQQQHHHQHHHHHQHHLQQQHVGEAGDLKTAAAAAVNSTLGLNHQQQQQQHHHHQHQQQQQQQQHHHHQQQQHHLQHLQQTHQDTSSSASTPNPLSTGAAATSNSNNNHHHHHHNNNNSSNSSNTTTDQLTASLLANGAAAAAAAAAAKSLAAEDNNNSLTPVAAAAAMAAHHAHAAAAAAALPPGFLPGLPFQFAAAAASAPDGRGHFRFADAEMQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPPYGGRNEDSMSDDRIAHILNEASSLMKGTAPGAMQHEAQQHARRASQHDESHSNEDSKSPPQTCTSPFYKEQLKQHQQHTHEALQQQAQHRLRQQEDLAQDKMARLYQEIMSRAPRESPFPNFLLSPFFSAAAAGGMPGSAPNAFPAAIAADENIRLAFEREMAKLQQQQQHQQQQQQQQQQQQSSLPNFPNFSSLMALQQQVLNGAQDLSLTKDIKDIKVNGQRSSLDHSQNSMDGVIMGGVGANNNSNNQKDANNASGNVSVNADAERHGVFPMHVRKSESGCLTPAPPAPPTSNASAQHTNSAAASPLSNSILPPALSQSDDFAATASPLQRMASITNSLITQPPVTPHHSQPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQIPQGLANKMQAAALPMQKMMNELKLQEPAQAQHIMQQMQAAAAMSAAMQQQQQAQHAAHAAAAQSQQQQQHAAVHAAQAAAAAAAAAAAHHQNMLLTSPGLPPQHAISLPASNSGGGGGAGGVMGGPPVGLVGTPGEKKPMLMPVVHTPHQPNSMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVGGAPANKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGQPHGSDANPIPSRENTNATPFDPVKFRMLLQQRLVELHKERMGLGGAPIPYPPYFAAAALLGHSLANLPSAAAAAGAAAAAAAAAGAGENELQALNQAFKEQMSGLDLSMSTLKRERTDDYGDDMDATSHVSDNESLEGDEKLASGDYNSAMAKSALAAAAYLSNAARSSRRKPAAPQWVNPAGAVATNAAGLAAAAVAAAAAAAAAAASADNERIINGVCVMQPSEYSRGVGADADGIAANAAVVGGVGAADAHSDKGEHDRNSEAGENEHAHMDIDQRFMEPEVSIKQEEDDDDDEINSTANAAAIVNLGSSAANDEDADAAAALAQKEDKIKVINEEKLRMVRVRRMSTGEEEPAQQPAAVTAAAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00890023;
90% Identity
iTF_00890023;
80% Identity
iTF_00890023;