Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411815.1:22328304-22343280[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0022 0.21 12.9 2.0 1 23 389 411 389 411 0.99

2 10 0.029 2.7 9.3 4.9 1 19 418 436 418 441 0.95

3 10 4.4 4.1e+02 2.5 0.7 1 23 445 467 445 467 0.93

4 10 2.9e-05 0.0027 18.8 0.5 1 23 472 495 472 495 0.98

5 10 0.049 4.6 8.6 0.1 2 20 535 553 535 555 0.95

6 10 0.00056 0.052 14.7 3.1 3 23 565 586 565 586 0.99

7 10 0.00045 0.042 15.0 3.7 1 23 630 652 630 652 0.98

8 10 1.5e-05 0.0014 19.6 2.7 1 23 658 680 658 680 0.98

9 10 0.00065 0.061 14.5 3.0 1 23 684 706 684 706 0.98

10 10 0.33 31 6.0 4.3 1 20 713 732 713 733 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0022	0.21	12.9	2.0	1	23	389	411	389	411	0.99
2	10	0.029	2.7	9.3	4.9	1	19	418	436	418	441	0.95
3	10	4.4	4.1e+02	2.5	0.7	1	23	445	467	445	467	0.93
4	10	2.9e-05	0.0027	18.8	0.5	1	23	472	495	472	495	0.98
5	10	0.049	4.6	8.6	0.1	2	20	535	553	535	555	0.95
6	10	0.00056	0.052	14.7	3.1	3	23	565	586	565	586	0.99
7	10	0.00045	0.042	15.0	3.7	1	23	630	652	630	652	0.98
8	10	1.5e-05	0.0014	19.6	2.7	1	23	658	680	658	680	0.98
9	10	0.00065	0.061	14.5	3.0	1	23	684	706	684	706	0.98
10	10	0.33	31	6.0	4.3	1	20	713	732	713	733	0.96

Sequence Information

Coding Sequence: ATGGAAGAGTTTAAGTTTTGCAGAGCATGTTTAGTGACTGGTGTAAGGATGTATAGTTTGGATACTACATCACAGTCACAGAATTCAATTGGAATTATATACTCTAATTTGACGCAGACGCAAATTTGTAACAATAACCAACATGTATGTTTTGAATGTGCCAGTTTATTATATAAATATCATATGTTTAAATCTAAATGTCTTAGAGCATACAACATTTTATCTAACATATCGGTTGATTCAGCAGTGTTGACAAGGCTAGAGATTGAAAATATTGATAGAGATGTACATAAGCTTGAATCCAATTTAAATTTAAGTGCAACAGAATTGTGTTTTATGGTGCCAGATAATGCCTTGAAGGCTAACACATTAGCTCAATCAATAATAGCAAAAAAGGATGACTATAACGAAGACTTTAAAGAGGATAAGCATAAATTAGGCATAAAAGTTGAGAATCAAGAGGAATATGCAAATGATTTACAATCATGCTATGATGACGATGAAGAAGAATGTGAAGAAGATAAGCTTGTACTAGAAATAAAAATGGATGAAGAAAATACTGAGAGTCATGATGAATATGTAGAAGATTCACAATTATTGATTCTCAATGAAGAGGAGTACTATGGAGAGGACCCAAAAGAGAATCAATTAGAATTTTACAAAAGATCAATAATATTAAATAACAATAACAAAAATCTGAAAAATACAACAAAAGAGTTTCTATTATCAGAAAAAAATAAGAATATAATAAATCATGCTGAGAAAGAATCTACAAGCTTAAAAGAAAATAAAGAAAAACTGACCAAGGAGTCAGATAATCTATTTGATTTAATTAATTCTTCTCTTAAAGAGTGTAATGATGATGATTTTGTTGTTCTATCAGTAGAAAATGTACCAAAAGAAGTGAATAATTATGTAGCTGGAAAACAGTCAGCAGCTATAAAAAGACTCAAGAATATACATAGTAATGATTATATTAGTGATAACGAACCATTTTCAAGAAGAACTATGAAAATCCCAATAAAGGAAAACACTAATTCTAGTATAAATCACATTAATTCAGAATACTTTAATGGGTATGCAACAGTTCAAGCACTTACATTAGACGATGCTAGGAAAGAGTTACTTTTGAGAAAAGAGTCAAGAAATTACATAAGATCAGCATTCAAATGTGACTTTTGCTACAAAGGCTATGGGATGCAAGATACATATGAGAATCATATGAAAAGGCATGATGTAGAAAATGGTGACTATGAATGTGAACTCTGTCATCTGAGGTTTCCAAAATCAATTCACTTGACCAGACACAAATGGAGTTGCCACAAAAGAAAATATAGCTGTGTATTGTGTCCTTACATTTGTTACTCCATAACTCAAGCAAGATCTCATGTCAGTCTTCATAAAGGTGAAAAGTACACATGTACAATTTGCGATGAAGTGTTCAGCATGCCTAATAGCCTAGTCATGCACAAACGCAAGAAGCATCTGGACCTGGCTGAAAGCGTCTGTGATTTGTGCGGCGATACATTCTGGTCCGCTGTTGGGCTTTCCTTCCACATAAAAAGATTGCACAGGAAGGATATAAACAGAAAAAAGGGTCCCAAATGTGAAGAGTGCAAGGTACACTTTGCTTCGGAGGCAGCGTGGAAGCGACATCTAGTACTTTCCAGCAGACACGTAGTCATTAACGGTTGCAAACATTGCGGTGAAAGATTCACGCACGTGCAAGCGCTGTATTATCACATACGTACGGAGCACCAGCGCATGAAACGAGAGAAATGGAAAGCAGCACCCACCACCAGCCTCGTCTACAGTGATGCCGTGGAAGGTGCACATCAGCTGTCAGACGACGCGAAGAAATTGATCTATACTGACCTTGCCTTACCCTATGTATGTGAAGTGTGCGGAAAGGCGTTTAAGAAGAATTGCTTCCTGATGTACCATAAAAACAAGCACACTGGTGAACGTCCCTACAAGTGTGAGAAATGCGACAAGACTTTCTTCACGCCAACCTCCCTGTGCATTCATCGTGCGATTCACACGCGCAAACATAAGTGCGACGAGTGCGATATGGTGTGCTCTTCTACGGACTCGCTTAATGAGCATAAGAAGGTTCATCAGGTCGGCTTCCGGCCACATAAATGCGTACTTTGCAAAAAAGATTTCTTCCATTTGTGCGATCTAAAGCTGCACATCGAGTGTGTTCATGACAATGTGCCTTGGTCTAAGAAGAAAATCAAAATAAGTCCCGATAGTGTATCAAATGATGAGTTCAACTTGACATAG
Protein Sequence: MEEFKFCRACLVTGVRMYSLDTTSQSQNSIGIIYSNLTQTQICNNNQHVCFECASLLYKYHMFKSKCLRAYNILSNISVDSAVLTRLEIENIDRDVHKLESNLNLSATELCFMVPDNALKANTLAQSIIAKKDDYNEDFKEDKHKLGIKVENQEEYANDLQSCYDDDEEECEEDKLVLEIKMDEENTESHDEYVEDSQLLILNEEEYYGEDPKENQLEFYKRSIILNNNNKNLKNTTKEFLLSEKNKNIINHAEKESTSLKENKEKLTKESDNLFDLINSSLKECNDDDFVVLSVENVPKEVNNYVAGKQSAAIKRLKNIHSNDYISDNEPFSRRTMKIPIKENTNSSINHINSEYFNGYATVQALTLDDARKELLLRKESRNYIRSAFKCDFCYKGYGMQDTYENHMKRHDVENGDYECELCHLRFPKSIHLTRHKWSCHKRKYSCVLCPYICYSITQARSHVSLHKGEKYTCTICDEVFSMPNSLVMHKRKKHLDLAESVCDLCGDTFWSAVGLSFHIKRLHRKDINRKKGPKCEECKVHFASEAAWKRHLVLSSRHVVINGCKHCGERFTHVQALYYHIRTEHQRMKREKWKAAPTTSLVYSDAVEGAHQLSDDAKKLIYTDLALPYVCEVCGKAFKKNCFLMYHKNKHTGERPYKCEKCDKTFFTPTSLCIHRAIHTRKHKCDECDMVCSSTDSLNEHKKVHQVGFRPHKCVLCKKDFFHLCDLKLHIECVHDNVPWSKKKIKISPDSVSNDEFNLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -