Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411826.1:4172470-4178950[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.62 58 5.2 1.3 1 23 51 78 51 78 0.86

2 15 0.61 57 5.2 0.9 2 23 107 129 106 129 0.94

3 15 0.019 1.8 9.9 0.4 2 23 150 171 149 171 0.96

4 15 0.2 19 6.7 0.0 1 23 175 197 175 197 0.93

5 15 0.082 7.7 7.9 0.9 1 20 202 221 202 225 0.81

6 15 0.0013 0.12 13.6 0.5 2 23 262 284 261 284 0.95

7 15 0.0028 0.27 12.5 3.3 1 23 291 313 291 313 0.96

8 15 0.0031 0.29 12.4 0.0 1 23 369 395 369 395 0.96

9 15 0.068 6.4 8.2 0.3 2 23 467 488 467 488 0.97

10 15 0.0076 0.71 11.2 0.3 1 23 492 514 492 514 0.98

11 15 0.027 2.5 9.4 1.0 1 21 519 539 519 542 0.85

12 15 0.083 7.7 7.9 3.5 2 23 549 571 548 571 0.91

13 15 0.05 4.7 8.6 1.2 3 23 580 601 578 601 0.92

14 15 0.0002 0.019 16.1 3.7 1 23 608 630 608 630 0.97

15 15 4.1e-05 0.0038 18.3 1.9 1 23 636 658 636 658 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.62	58	5.2	1.3	1	23	51	78	51	78	0.86
2	15	0.61	57	5.2	0.9	2	23	107	129	106	129	0.94
3	15	0.019	1.8	9.9	0.4	2	23	150	171	149	171	0.96
4	15	0.2	19	6.7	0.0	1	23	175	197	175	197	0.93
5	15	0.082	7.7	7.9	0.9	1	20	202	221	202	225	0.81
6	15	0.0013	0.12	13.6	0.5	2	23	262	284	261	284	0.95
7	15	0.0028	0.27	12.5	3.3	1	23	291	313	291	313	0.96
8	15	0.0031	0.29	12.4	0.0	1	23	369	395	369	395	0.96
9	15	0.068	6.4	8.2	0.3	2	23	467	488	467	488	0.97
10	15	0.0076	0.71	11.2	0.3	1	23	492	514	492	514	0.98
11	15	0.027	2.5	9.4	1.0	1	21	519	539	519	542	0.85
12	15	0.083	7.7	7.9	3.5	2	23	549	571	548	571	0.91
13	15	0.05	4.7	8.6	1.2	3	23	580	601	578	601	0.92
14	15	0.0002	0.019	16.1	3.7	1	23	608	630	608	630	0.97
15	15	4.1e-05	0.0038	18.3	1.9	1	23	636	658	636	658	0.98

Sequence Information

Coding Sequence: ATGACTAACACACGGATACAAGAAAATAGATGCACTACATATAAGGAATTGAATCGAGTGAAAAAAGAAAAAGCACTGCAATTGATAAAAGAAATAAAGTTAATCCTAACATTTACGAATGCTACTCCGTATAAGTCTAGAGCGAATAGATTTTTTTGCGCTTATTGCTCAACTAAAGAGCACCGTTACTATGAGGACCCTGATGAATTACGACTTCATGTAAGAACTAAACATGTAGCAGACAGGATCCGAAAAATAGATCATATTATGCATCAATATTGGATAGATGAAACAATGAAAATGGATATCAAGAATTTAAAATGCACTATGTGTAGCGTCGACATACCCCACTGGAATGACATGTTCAAACATTTGAAGGAAAGACACTACATAGTTTTAGATGAAGCTTACTCAAAGGTGATTCCTTACGACTTGTCATTCGATTCGAAATGCGCTCTCTGCGAGCAAAATTTCGCAAGTTATATGCGATTAAACAGTCACATGAACGCTCACTACAACAATTATGTGTGTCCCGAATGTGGTGATACATTTCTTGCTGAAGGAAGGTTATTGAAACACGTCCAAACGCATGAGGTTGCTGAGTATCAATGCAGCTTTTGTCCAAAAGTGTTCGCCTTGTTCAAATATAAAATAAAACATGAAGATTTGGTACACCACAAGCTTCCAAGACTCAAGTGCATTTATTGCGGCGAGAGATTTTTAGCGGATTATGCGAAACATCTTCATTTGATCGAGAAACATAACAAAAAGCCCAAAGTTATTAGTTGCGAATTTTGTGACAAGACTTTTACGTGGCGACCTTATTTCATAAAACATATGCAAATTAACCATGGAGGGGATAATAAAAAGCATGCGTGCCCGCATTGTGGAAAAAAATTCCTTTATCTAAAGGATTATAAGATACACCTGTTGACGCACGCTGTAAAAAAATTGAAACCTTTTCCTTGCACGATATGCGAAAATGAAGATCAGGAATTGAATGAAAAGAGAGCGAAAAGAGAAAAGTTACTGAAATTGATAAAAGAAGTCAAATTAATTCTAACATTTACGAACGCTACTCCGTATAAGTCTAAAGCTAATAGATACATTTGCCCTTACTGCTCGGCTGAGAACCAGTTCTTTGAGGATCCAGATGATTTAAGGGCCCACGTAAGAGTCCAACACAGAGCCGACAGGATCCGAAAAATAGATGACATTATGAATCCACATTGGTTTGTTGAAACTTTAAAACTAGATATCAACAATTTAATATGCAATATGTGCTGCATCGACATACCTCATTGGAATGACATGTTCAAACATTTGAAGGAAAAACACGATATTGTTTTTCATGAGGCTTACACCAAAGTAATCCCTTACGATTTGACAACGAATCCGAAATGCACCCTCTGCAAGCAAGATTTCGTAAGTTATATGCTATTGGATGGTCATATGAATGCCCACTATAACAATTATGTGTGTTCCGAATGTGGGGATACATTTCTAGCTGAGTCTAGGTTAAAGAGGCACATCAAAACGCATGAAATCGGCGAGTTTCAATGTAGTTTCTGTCCAAAAGTTTTCACGATGCTCATTTATAGAAACAAACATGAATATCTAGTTCATAATAAGAAACCTAAATTGAAATGTCAATACTGTGGTGAGAAGTTCTTTACGGATTATGCGAGACATCATCACATGATCGAACAACATGACAAAAAGGTTAAAGTTATTAATTGTGAATTTTGCGATAAAACATTTACGTGGAGGCCTTATTACATAAAGCATAAGAAGTTAAAGCATGACGAGTCTAATAAAAAGCATGAATGCAAGCAATGTGGTCGAAAATTTATTCATCTGATGCAATTAAATGAACACCTGTTGAGGCATACTGGAGAAAGGCCTTTTACTTGCGATCTTTGCGGTAAAAAATATGTTTCGTCGGCTTCTTTAAGCCATCACCTGACGAGACATAAAAAAGTCTGGGGAGATTTCCCAGTTGTCGCTGATCCAATGGTAGAAGTTTATGAACTTTCTATGTAG
Protein Sequence: MTNTRIQENRCTTYKELNRVKKEKALQLIKEIKLILTFTNATPYKSRANRFFCAYCSTKEHRYYEDPDELRLHVRTKHVADRIRKIDHIMHQYWIDETMKMDIKNLKCTMCSVDIPHWNDMFKHLKERHYIVLDEAYSKVIPYDLSFDSKCALCEQNFASYMRLNSHMNAHYNNYVCPECGDTFLAEGRLLKHVQTHEVAEYQCSFCPKVFALFKYKIKHEDLVHHKLPRLKCIYCGERFLADYAKHLHLIEKHNKKPKVISCEFCDKTFTWRPYFIKHMQINHGGDNKKHACPHCGKKFLYLKDYKIHLLTHAVKKLKPFPCTICENEDQELNEKRAKREKLLKLIKEVKLILTFTNATPYKSKANRYICPYCSAENQFFEDPDDLRAHVRVQHRADRIRKIDDIMNPHWFVETLKLDINNLICNMCCIDIPHWNDMFKHLKEKHDIVFHEAYTKVIPYDLTTNPKCTLCKQDFVSYMLLDGHMNAHYNNYVCSECGDTFLAESRLKRHIKTHEIGEFQCSFCPKVFTMLIYRNKHEYLVHNKKPKLKCQYCGEKFFTDYARHHHMIEQHDKKVKVINCEFCDKTFTWRPYYIKHKKLKHDESNKKHECKQCGRKFIHLMQLNEHLLRHTGERPFTCDLCGKKYVSSASLSHHLTRHKKVWGDFPVVADPMVEVYELSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -