Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411829.1:2769543-2776495[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0004 0.037 15.2 3.7 1 23 211 234 211 234 0.94

2 10 0.0089 0.83 11.0 2.3 1 23 256 277 256 277 0.97

3 10 0.013 1.2 10.5 0.4 1 23 283 306 283 306 0.92

4 10 0.29 27 6.2 0.1 2 23 312 335 311 335 0.92

5 10 8.8e-05 0.0082 17.3 0.5 1 23 341 363 341 363 0.98

6 10 0.0069 0.65 11.3 0.9 1 23 369 392 369 392 0.96

7 10 0.63 58 5.1 1.0 2 23 402 424 401 424 0.92

8 10 3e-05 0.0028 18.7 0.3 3 23 439 459 438 459 0.99

9 10 1.1e-06 0.00011 23.2 4.7 1 23 465 487 465 487 0.99

10 10 0.00071 0.066 14.4 0.1 1 21 493 513 493 514 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0004	0.037	15.2	3.7	1	23	211	234	211	234	0.94
2	10	0.0089	0.83	11.0	2.3	1	23	256	277	256	277	0.97
3	10	0.013	1.2	10.5	0.4	1	23	283	306	283	306	0.92
4	10	0.29	27	6.2	0.1	2	23	312	335	311	335	0.92
5	10	8.8e-05	0.0082	17.3	0.5	1	23	341	363	341	363	0.98
6	10	0.0069	0.65	11.3	0.9	1	23	369	392	369	392	0.96
7	10	0.63	58	5.1	1.0	2	23	402	424	401	424	0.92
8	10	3e-05	0.0028	18.7	0.3	3	23	439	459	438	459	0.99
9	10	1.1e-06	0.00011	23.2	4.7	1	23	465	487	465	487	0.99
10	10	0.00071	0.066	14.4	0.1	1	21	493	513	493	514	0.94

Sequence Information

Coding Sequence: ATGAATCACTCGTTATGTAGAGTTTGTTTGAGAGTTATAAGTGAGGGTGAATTCAAACCCTTCGATAAAGATGTATCTTTGAAAATTCGATCATGTCTTAGAATAAACCTGATGAAGAATAAAGCATATCCAAGCCAGATTTGTTCAGGATGTGTATATAAAATAGAACAAATAAATGACTTCTGTGTTGCTATTAAATATAATCAAGAAATGTTATTGCAGCACTTACAGAATGGCTCATTGAGTAGTTATTATTTAATATTGTCTAGTCAAGTTTGTGTTAAAGAAGAAAATAAAATAGCTGATAGCAATGAAAACTTTGAAGTAAAAGATTCAATATTTAAAGAAGAAATAAATAAGGCTAATGTTTATAGCTCTTCGTATGCTGTAGAATCTTGTTTGGAAAATAAAAGCAATGAAATGCTTAATGAGACTGAATTGATAAAAGACAAAGAATTAATCAAAAGTAATGATTTTAATGAACCGGAAAGTTTAGATGATGACAATTTAAAACTTTCTTCTTTTAAGGATGAAATAGATTATAACTCAGAATCCATACATGAAAATCAAGAGGAATGCAATATAAATGTAAAAGAAAAACCGAATATAGGTAGTAAAGTTTTAGATGACTTCAATTGCGTAACCTGTGATAAGGTTTGCAATACACATGATAATTTAAAAGCACATTACAAAGATGAACATGCAAAAGAGAACGAAGCTGTTGAAACTACGTTTACAGAACAGAATTGTAATGGTAACGTTATGTATAAGTGCGATAAATGTGCTAAGGTTTATCCAAAGAAGTATATGAAGAGACACATGTTATATCACTCAAATGAAAGACCGTATGTTTGCAAGTTGTGTGCAAGAACCTACAAAACCGTGTCAGATATTATGAGACATGGGTTCAGAGCACACAGTGGAGTCAGACTGCAGTGTAGCTACAACTGTGGGTTTAGTACTGCCTACACAGGTGCATTGAAAGAGCATGAGGATAGGGTACACAAACATGTCTATAAGTACACTTGTGAGAAATGCGGCAAGGGTTTCCAAGTCAAGACCTGGTATGTTCAACACCAGAACATTCACAACGGCTTGAAGCCATTCGTCTGTGATATTTGCGGAGTAGCTTTCCATATGGACAAATATCTGACCACACATCGAAGTAGCATGCATCCCCAGTCGCTGGATAAGAAGCGACTGATCTGTCTACACTGTGATCTCAAGTGCGACTCCGTGAACAGCCTCGCGTTACACCTGGAGAATGAACACAATGTTCCGAGGTCTAAAACGAAGTCTCAGAAAGCCAGTCTGTGTGATTATTGCGGAAAAATCTTAAATCGACCAGAACAGTTAAAGATACATCGCAAGATGCATTTAGGAGAGAAGCCTTATCGATGCAGTATATGCAATAAGTCGTTCTCTAGGAAATTCTCTCTACACGTTCACGAGCGCACTCATTCCCGTGCCCGGCCGTACACGTGCGTACCATGTGGGACACGCTACTCGCAGCCGAGCGCCCTCTACCGGCACCAGCGACTGTAA
Protein Sequence: MNHSLCRVCLRVISEGEFKPFDKDVSLKIRSCLRINLMKNKAYPSQICSGCVYKIEQINDFCVAIKYNQEMLLQHLQNGSLSSYYLILSSQVCVKEENKIADSNENFEVKDSIFKEEINKANVYSSSYAVESCLENKSNEMLNETELIKDKELIKSNDFNEPESLDDDNLKLSSFKDEIDYNSESIHENQEECNINVKEKPNIGSKVLDDFNCVTCDKVCNTHDNLKAHYKDEHAKENEAVETTFTEQNCNGNVMYKCDKCAKVYPKKYMKRHMLYHSNERPYVCKLCARTYKTVSDIMRHGFRAHSGVRLQCSYNCGFSTAYTGALKEHEDRVHKHVYKYTCEKCGKGFQVKTWYVQHQNIHNGLKPFVCDICGVAFHMDKYLTTHRSSMHPQSLDKKRLICLHCDLKCDSVNSLALHLENEHNVPRSKTKSQKASLCDYCGKILNRPEQLKIHRKMHLGEKPYRCSICNKSFSRKFSLHVHERTHSRARPYTCVPCGTRYSQPSALYRHQRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -