Basic Information

Insect: Leucoma salicis
Gene Symbol: erm
Assembly: GCA_948253155.1
Location: OX411829.1:1003508-1004623[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 5.9e-06 0.00055 21.0 0.4 1 20 146 165 146 168 0.92

2 6 3.1e-07 2.9e-05 25.0 1.6 1 23 174 196 174 196 0.97

3 6 1e-06 9.6e-05 23.4 2.1 1 23 202 224 202 224 0.98

4 6 1.2e-05 0.0012 19.9 3.2 1 23 230 252 230 252 0.98

5 6 0.00061 0.057 14.6 6.0 1 23 258 280 258 280 0.99

6 6 2.3e-05 0.0022 19.1 4.4 1 23 286 309 286 309 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	5.9e-06	0.00055	21.0	0.4	1	20	146	165	146	168	0.92
2	6	3.1e-07	2.9e-05	25.0	1.6	1	23	174	196	174	196	0.97
3	6	1e-06	9.6e-05	23.4	2.1	1	23	202	224	202	224	0.98
4	6	1.2e-05	0.0012	19.9	3.2	1	23	230	252	230	252	0.98
5	6	0.00061	0.057	14.6	6.0	1	23	258	280	258	280	0.99
6	6	2.3e-05	0.0022	19.1	4.4	1	23	286	309	286	309	0.98

Sequence Information

Coding Sequence: ATGCAGCCGTTCCAATCTTCAGCTCGGCCGGAGGGGCCGCGGGAGTCTTCCCCTGAACGCGCCAAATCTCCAGACACTCCGACAACACCAGTTCTCAACTTTTCCATAGCACGTCTCATGGAACCTGACAGAAAGAAATCCGTATCTCCTGAACCACCACCGCCCCCTAGTTTTCTGTCCTACGGAGCTCAACTTCTCGATTCAGCCTTCAAGCAATACATACCAGCTACCAGAAGACAGCTAGTATCTCATTATCCGTTACTGTATTATGCGCCAGACCTTGTATCTCTGACATATGCCCATCAACTGCATCTTCCCAGGCCTCCACCACCAGCATCACCTGTCCAACGACCTCCAAGCCCTAGGCCTCCAGCTGCAGACCATGCAGTTTCATCCACAACAGGACCAACTCCTTCCCCAGCAAAGAATAAAAGCTTCGCTTGTGGTgattgcgggaaggtatttaatgcacattacaatttgacgaggcacatgccagtccacactggcgccaggccatttgtctgcaaaatttgtggcaaaggctttcgacaagcatccactttatgtagacataaaattatccacacgtctgagaagcctcacaaatgcttgacatgcggtaaagccttcaaccggtcatctactctgaacacgcatgccagaatccatgctggatacaaaccttttgtatgcgaattttgcgggaaggggttccatcaaaaaggcaattataagaaccatagactcacacacagcggagaaaaagcctacaaatgtaacatttgcaataaagctttccatcaaatttataatttaacctttcatatgcacacacataacgaaagaaagccattcacttgcagtatttgtgcgaaaggattttgcaggaactttgatcttaagaaacacacgaggaagttgcaTTTAGGAGTCGGTAGTTCAAATAATGACTCTTCTATAGACACGCAAGACGAATCAACACAAGAGGCATCCAGCCCTTCTGAAGAGGCCAGCAGGGTTGCTTTCAGACCTTTCTTAAGTTCTCCGTACCCCCGGATCTTGGACCATTCGCACATGACGGCACCAAATACCTTTTTCTCTAAGTTATTGTGA
Protein Sequence: MQPFQSSARPEGPRESSPERAKSPDTPTTPVLNFSIARLMEPDRKKSVSPEPPPPPSFLSYGAQLLDSAFKQYIPATRRQLVSHYPLLYYAPDLVSLTYAHQLHLPRPPPPASPVQRPPSPRPPAADHAVSSTTGPTPSPAKNKSFACGDCGKVFNAHYNLTRHMPVHTGARPFVCKICGKGFRQASTLCRHKIIHTSEKPHKCLTCGKAFNRSSTLNTHARIHAGYKPFVCEFCGKGFHQKGNYKNHRLTHSGEKAYKCNICNKAFHQIYNLTFHMHTHNERKPFTCSICAKGFCRNFDLKKHTRKLHLGVGSSNNDSSIDTQDESTQEASSPSEEASRVAFRPFLSSPYPRILDHSHMTAPNTFFSKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785466;
90% Identity: iTF_00273889;
80% Identity: -