Lsal006985.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- znf711
- Assembly
- GCA_948253155.1
- Location
- OX411822.1:5974407-5989090[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0065 0.6 11.4 1.5 2 23 71 92 70 92 0.96 2 12 0.012 1.1 10.6 1.0 3 23 100 121 98 121 0.94 3 12 0.64 59 5.1 0.2 2 23 129 151 128 151 0.89 4 12 6.3e-05 0.0059 17.7 3.1 1 23 157 179 157 179 0.96 5 12 3.4e-06 0.00032 21.7 4.0 1 23 185 207 185 207 0.98 6 12 0.023 2.2 9.7 1.6 1 21 213 233 213 234 0.93 7 12 2 1.8e+02 3.6 4.4 1 19 252 270 252 275 0.92 8 12 1.3e-05 0.0013 19.8 2.8 1 23 575 597 575 597 0.98 9 12 2.9e-05 0.0027 18.8 1.0 1 23 604 627 604 627 0.94 10 12 0.56 52 5.3 0.1 1 23 635 658 635 658 0.96 11 12 0.0039 0.37 12.1 2.9 2 23 665 688 664 688 0.92 12 12 2.3e-05 0.0021 19.1 0.4 1 21 694 714 694 715 0.96
Sequence Information
- Coding Sequence
- ATGGATTCTAATTTACCATTTTTCAGCTTACCATTTGTGGACTCTGATACACCAGACTTAGATTTCAATAAGTTGAAAGAACCTGTGTATGATGTCTTAAATCCAGATCTACCACATAGCACATTACTTGGCCCTGATGATGTTCTAGCTCAGTTTCTATCAGGAGATGAACCCTTAGAAGAGCCGGACTTAAATGGGCCAACAACACTACACTGTGAGATATGTAGTAAACAGTTTGATAATGCCAAAAAATATTATGGACATTTAAGAGTGCATTCTAAAGATAATCTTTGGATATGCGATAAATGTCCTAACCAGAAGTTTTCAACAAAGCAGCAATTAATGAAACATAGTCTGACACACAAGCCTTTGGAACTCATATGGAAGTGTCCGCACTGTCCCATGGCTATTGAAGCTTTGTGGAAGCTGCAGCAACATATATTTCAGAAGCACTTGGATTATAGACCACACAAGTGTGATTTGTGTGAGAAAAGGTTTTACAAGCCCTCAGACCTGAAGAAGCATAAAGATGTACATAATGATGTAAAGAAGTATGTATGCACAGTTTGTGAGATGCGTTTTAAACATAAATCCAACATGAGAAGGCATATGTTGAGGCACACCAATGAGAAGCCATTCTTCTGTCCCGGATGCAGGAACAAATTTAAACATTTAGCTTCAATGAAGCGGCACGCACAGAAATGTCCATTAAACAAGTTCGAGAGCGATCCTCTGGACAAGTCGATTCGCCGACATTATTGTCGGTTTTGCGGTAGCACCTTCCAGTATAAGAGCGCGCTGCTAGAACACTGCGTTAGACAACACACTAATAACCCAACAGAAGCAGGCAAGAAGGACAAATACCAGAACAGTGACACAAATCGTATAGTTGACAACATTGTCGACGACATATTATCCGCTGAAGATGATTATATGACAATGCCCACACAAAATTCAATTCTCAATAATTACAATGAACCAAACATCGATAACAATGCTGACAACCTCATGCAAATAGAACTGCTCAAAGAAATGAATCAGTTTCAAATTTTAGATGAAGAATTACTTTATAACGACATAGACTTTGACACTATTCAACCAAGCCAAATATTTAATACAAACTCAAATGATATTGATTACCAAGATAAAAATGGAGAGACATTATTCGATTTTAATGATGGCAAAAATATTGACCAGGATGTCATAATGAATGCTATTTGTCATAAAGCTAATATACCTGATGAACTATTAAATGTTGATGTTTTAGCACCTAAACTTGGATGTGCAACTATATTTGAAAGCGATGTAGACTTAGAAGCTAGTACTAATTTAGCAGCTAATTTGAATCAGTTAATTGGAGAGAATCACGTTCAGTACATATCTACTGAGTATGATGATACATTTATTATAAGTTTAAATAGTGAAATTGATGCTGAGAAGTTAACAGATATGTTGAATATAGGTGTAGAGTTAGTTAATAAAAAACAAGAAGAAAATCCTGTTATAGATGATAAAAGTAAATCATCTAAGCCAAGTGATCCTGTACTTGTTACGTTTGAGAAGGTTGCGGATCCGATCGTAGTTAAACTTGAAGAATCTGTTCCATCAAGTGCTGAGAAAATAGAAAATGATATACAAGAAGTTCTTAAGCCAGGGGTTGTACAAGAAAATGAGGACAAAGCGATGAAATCTAAACCTCAAGTGAAGAAGACTATAAAATTATTTGTTTGTAGAACATGTAATAAAGTCTTCAGTAAAAAGGATAATTACAAGTCTCATAGAGCGACGCACGAGCCGTCGCTTCGGGCGCACGCTTGCAACGTGTGCGGAGAACGCTTCGGGTACCGCTCGTCGCTGACCAAGCACGTGCGCGCGCGGCACACGCCCGCCGTGCTGCGCGCGCACCGCTGTCGCCTGTGCGCCGCCGTGTACCCCGCCGCCTGGCTCCTAAAAACCCATATATCAAGAGACCACGAGGGCCTCACCCCGCACGCTTGCGATTTCCCCGGCTGCGGGAAGAAGTTCTACAAACAGTGTGACCTTGTTGTTCACAAAAGGCAGCACACCGGTGAGCGGCCGTTTGTCTGTGACGTATGCAAGCGCGCCTTCCCGCACGTCTCTCACCTCAATCGGCACATCAAAGCGGCCGTTTGTACCAAACAGTAA
- Protein Sequence
- MDSNLPFFSLPFVDSDTPDLDFNKLKEPVYDVLNPDLPHSTLLGPDDVLAQFLSGDEPLEEPDLNGPTTLHCEICSKQFDNAKKYYGHLRVHSKDNLWICDKCPNQKFSTKQQLMKHSLTHKPLELIWKCPHCPMAIEALWKLQQHIFQKHLDYRPHKCDLCEKRFYKPSDLKKHKDVHNDVKKYVCTVCEMRFKHKSNMRRHMLRHTNEKPFFCPGCRNKFKHLASMKRHAQKCPLNKFESDPLDKSIRRHYCRFCGSTFQYKSALLEHCVRQHTNNPTEAGKKDKYQNSDTNRIVDNIVDDILSAEDDYMTMPTQNSILNNYNEPNIDNNADNLMQIELLKEMNQFQILDEELLYNDIDFDTIQPSQIFNTNSNDIDYQDKNGETLFDFNDGKNIDQDVIMNAICHKANIPDELLNVDVLAPKLGCATIFESDVDLEASTNLAANLNQLIGENHVQYISTEYDDTFIISLNSEIDAEKLTDMLNIGVELVNKKQEENPVIDDKSKSSKPSDPVLVTFEKVADPIVVKLEESVPSSAEKIENDIQEVLKPGVVQENEDKAMKSKPQVKKTIKLFVCRTCNKVFSKKDNYKSHRATHEPSLRAHACNVCGERFGYRSSLTKHVRARHTPAVLRAHRCRLCAAVYPAAWLLKTHISRDHEGLTPHACDFPGCGKKFYKQCDLVVHKRQHTGERPFVCDVCKRAFPHVSHLNRHIKAAVCTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932970;
- 90% Identity
- -
- 80% Identity
- -