Lsal014292.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411815.1:22307638-22322092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.16 13.2 1.9 1 23 333 355 333 355 0.99 2 12 0.13 12 7.3 6.5 1 23 362 385 362 385 0.96 3 12 0.27 25 6.3 1.6 1 23 389 411 389 411 0.96 4 12 1.8e-05 0.0017 19.4 2.0 1 23 416 439 416 439 0.98 5 12 0.086 8 7.9 0.1 2 23 446 468 446 468 0.96 6 12 0.011 1.1 10.6 0.1 2 20 479 497 479 499 0.95 7 12 6.5e-05 0.0061 17.7 0.6 3 23 509 530 509 530 0.97 8 12 0.34 31 6.0 0.3 2 23 545 567 545 567 0.95 9 12 3.2e-05 0.003 18.7 3.3 1 23 584 606 584 606 0.98 10 12 1.2e-05 0.0011 20.0 0.2 1 23 612 634 612 634 0.98 11 12 1.7e-07 1.6e-05 25.8 1.4 1 23 640 662 640 662 0.98 12 12 1.2 1.1e+02 4.3 6.6 1 21 668 688 668 691 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAGTTAAAGTATTGCAGGATATGTTTAGTTACTGGTGTTAAGATGTACAGTTTACATAGTACTTCGCACGACTCAATTGGAGAGATATACTTACATTTAGCGCAAATACGGGTTCCTGATAGAAATCAACATGTATGTTTTGAATGTGCCAGTTTACTACTCAAATATCAGGTGTTTAAGTCAAAATGTCTCAGGGCACACAAGATTTTATCTAATATCTCAGTCAATTCAACAATGTTGATAAACCAAGTGATAAATAATATAGACAGAACGGCAAATAAGCTTGCATCAAACTTGAAAATGACTGAGACAGAATTGTATTTTATACATTCAAATGATTGCACAGAAGCCAAAACTCATTCAACAATACCTAAAACAGACTTTGAAGAGCACCAAGTCAAGATAGAATCTGAAGTTCAAACCATTCTTATTCATGAAGAATATAACCCTAACTATTCACTAAGACCTCTGACCTTAAAAGAAAACATTTATTTAAAAAATGAAATCAAAGAATTGGCATTTTCAGAACCAAATGATAACAAATATGAAAAAGAACAAAATACTAAAAAAAATAATATGAGCAATGAAGTTCTGACTACTGAATCACATAATCCTTTTAATGGCGTGAATGCTTCTCTAGACAGTTATAATGATGATGATTTTATTGTTAATTCTCCAGTGAAGGCGTTAGAGGAAGCTGAAGAATCTATTAATGTAAAATATAAAGCTACCCCCAAAAAGCAGTCAAAACCTAAAAGAGTGAAGAAGACCACTGTACAGAGTGATGATGATTTTAGTGATAATGAACCATTATCAAAAAGAGTTACTAAAAGCCATGATAAAAAAGATAAAGGCTTTAATAAGAAATATAAATATCGTTTTGGTTTAGAGTTCTTCACTGGGTATGCCACAGTTGAGGAACTTACTCCAGACGATGCTAGGAAAGAGCTGCTTTCAAGAAAAGAATCTAAAAATTACAAAATATCACCGTTTAAATGTGATTTTTGTTTCAAAGGTTATGAAGTCAAAACTGCATATGAAAATCATATGAAAAGGCATGATGAAGAAAATGGTGATTATGAATGTGAACTCTGCCACCTCAGGTTTCCCAAACCACTCTACTTGTGCAAGCATAAATTGAGTTGTCACAAGAGAAAGTTTAGCTGCAAGTTGTGCTCATACATCTGTAACTCCATGAGTCAAGCCAGAGCTCACGTCAGTCTTCATAAAGGGGAAAAGTACACATGTACAGATTGTGGGGAAATGTTTAGCATGCGTAACAGCCTATTCATGCACAAACGCACAAAGCACCTGAAGGTAGCGGAAAACGTATGTGAACTATGTGGTGACACGTTCGGCTCTGCTAGAGGGTTATACTTGCACTACAAAAAATTACACAGGAAGGACAAAAACAGCAAACAGGGTCCCAAGTGTGAAGAGTGCAACGCACATTTCTCTTCGGAGGCAGCGTGGAAACGACATCTAGTACTTTCTACCAGGCATAAAGTCATTAACGGATGCAAGTACTGCGGAGAGAGATTCGCGAACCTGGACGAGCTAAACTCTCACAAACGAGAGCAACATAGGCGCATTCAACGCAAGAAACCAGCCCTAGAACTGCCCGCCTCCTGTCCTATTTGCAAGAAATGGCTGACGAATCTATTGGAGTACAATACTCACGTGAAAACGGATCATCCGCAATCGGACGAGGCGAAAGAGTTAGCGGCCAATGACCTGGCAGCCTTCGTGTGCGAAGTGTGCGGTCAGGCGTTTAAACAACAATGTTTCCTGACATATCACCAGCGGAAGCACACTGGTGAACGTCCATATAAATGTGATGACTGCGGGAAGACTTTCCAGATGCCAGGCAGCCTCTCCATACACCGTACAGTCCACACGCATAAACCGAAATACAAATGTGACTTGTGCACTAAAGCGTTTGCTTCGAAGAGTTCGCTCAACAAACATATGAAGTTACATCTCGGCATACGGCCACACAAATGCACGATTTGCGACAAAGGCTTCCTCCACATGTGCGATTTAAGGCTGCACATCAAGTGTGTTCACGACAAGGTACCTTGGCCGAAGAAAAAAAATAAAAGAAATGCCACAGACAATAGTCAAACTTACGTAGATTATAATTGA
- Protein Sequence
- MEELKYCRICLVTGVKMYSLHSTSHDSIGEIYLHLAQIRVPDRNQHVCFECASLLLKYQVFKSKCLRAHKILSNISVNSTMLINQVINNIDRTANKLASNLKMTETELYFIHSNDCTEAKTHSTIPKTDFEEHQVKIESEVQTILIHEEYNPNYSLRPLTLKENIYLKNEIKELAFSEPNDNKYEKEQNTKKNNMSNEVLTTESHNPFNGVNASLDSYNDDDFIVNSPVKALEEAEESINVKYKATPKKQSKPKRVKKTTVQSDDDFSDNEPLSKRVTKSHDKKDKGFNKKYKYRFGLEFFTGYATVEELTPDDARKELLSRKESKNYKISPFKCDFCFKGYEVKTAYENHMKRHDEENGDYECELCHLRFPKPLYLCKHKLSCHKRKFSCKLCSYICNSMSQARAHVSLHKGEKYTCTDCGEMFSMRNSLFMHKRTKHLKVAENVCELCGDTFGSARGLYLHYKKLHRKDKNSKQGPKCEECNAHFSSEAAWKRHLVLSTRHKVINGCKYCGERFANLDELNSHKREQHRRIQRKKPALELPASCPICKKWLTNLLEYNTHVKTDHPQSDEAKELAANDLAAFVCEVCGQAFKQQCFLTYHQRKHTGERPYKCDDCGKTFQMPGSLSIHRTVHTHKPKYKCDLCTKAFASKSSLNKHMKLHLGIRPHKCTICDKGFLHMCDLRLHIKCVHDKVPWPKKKNKRNATDNSQTYVDYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -