Lsal008708.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411816.1:3924944-3953471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5 2.3e+02 3.3 0.2 1 16 257 272 257 274 0.84 2 12 0.0018 0.17 13.1 1.9 1 23 504 526 504 526 0.99 3 12 0.23 22 6.5 5.2 1 23 533 555 533 555 0.95 4 12 0.19 18 6.7 0.7 1 23 559 581 559 581 0.95 5 12 0.00013 0.012 16.7 0.8 1 23 586 609 586 609 0.98 6 12 0.0033 0.31 12.3 0.2 1 23 613 636 613 636 0.94 7 12 0.0013 0.12 13.6 0.2 2 20 650 668 650 674 0.93 8 12 0.00011 0.01 17.0 1.4 3 23 684 705 684 705 0.98 9 12 0.0018 0.17 13.1 4.6 3 23 755 775 754 775 0.98 10 12 9.3e-07 8.7e-05 23.5 1.3 1 23 781 803 781 803 0.98 11 12 4.1e-06 0.00038 21.5 0.1 3 23 811 831 810 831 0.98 12 12 0.00027 0.025 15.7 0.0 1 23 837 860 837 860 0.92
Sequence Information
- Coding Sequence
- ATGGAAGACTTAAAAGTTTGCCGTATTTGTTTGATAAGGGATGTAAGAATGTACGACTTAAAATCATATCCCTTGAATGATTATTTTAAACCAGTTTTTGGAAAAAAACTAACTATCGACAACGTGCCGCCATACGCATGCTATGAATGTGCTGCTCTCATAAAAAAGTTTTACTTCTTCATAGAAAAATATCGTCAGAGTTACTCTACACTAAATGACTTATTGAATTACATTGGCGAGTTGAAATTTTCAGGACTGAATATGTTAGATCATGAGTATCGACAGTTATCTTCAAACCTCACAATATCCGACATACAAAAGCTTGCCACATGTTGCATAGAAGATAAGTGCAAGAATAAACTTGAAGATGCAGAGAGTATCAAAGACAAAGATGCTGATGATTTAGATTATGCAGAAGACAATGATGATGATTTTTTACCAACAAAGGACGTGGAGTCTGATGATAATGACGATCCACTATCTTTACTTGAAGTAAAATATTACGAAGAAATACAAGTAGATCAAAAGACTAAAAAGTCAAAAACTTTAAAATCAACCAAAACTAGCGTAGTACCAGCCAAAAGAAAACGAAGTTGTGTGGCGCAAATGGACAATGTAAATAAGATCAAATACGAAGCAAGGGCTGATGACCTCATAGACACTGGAATAGACACAGAGAATAATGTTACTGTTGGTAACCGAACGGCCGAAGAACAACTAGAGGAGATAAATAAGAAGAAACAGTTAGTGAACTATCTGAACTCTCGTTATAAATGCAACTTGTGCCTTAGAGGTTTTATTGAGAAGGAATCCTGGAAGCATCAAACACATTCAGCGCTTGTGACTATCGACGACGTGCCGCCATATGCCTGCTATGAATGTGCGGCGCTTTTAAAAAAGTTTTATATCTTCAGAAAGAAGTGTCTTCGGAGTTACACAATACTCAAAGGCTTATTGAATTACAATGGGGAGATAAAATTCTCTGAACTGAATATGTTAGATCGTAATTATCTACAGTTATCTTCAAACCTCACAATGTCCGACACACAAAACCTAGCAACATGTTGCATAGAAGAGAAGAACAGTCAGAGTGAACCCAAACATGAGAAAAGTATCGAAGACAATGATGATGATCATTTTGATTATGAAGAAGACAATGATGATGTTTATTTATCAACAAAGGAAGTAGAGTCTAGTGATAATGACGATTCACTATCTTTACTCAAAGTAACAGACTACGGAGAAATAGAAATAACCCGAATCACCAAAAACTCTATGTCAGAACCGATTAAAACTAGCTTAGTACCAGTTAAAAGAAAACGTGGCCCTCAGGCGCGAATGGCGGATGTCAAGCACGTCAAATACGAAGCAAGAGCTGATCACGACACCTATCTCATAGACAATGGAATCGACACGGAGAACTATGTTACTGTTATTAATCTAACGCCTAAAGAACAAATACAAGAGATGAATAAGAGGAGACAATCAGCGAGCTATCTGAACTCTCGTTATAAATGCAACTTATGCTATAGAGGATTTATTGACACGGAAGCCTGGAACCATCACCTCAAGAAACATTCAACGGTCTCTGGTGACCACGAGTGTCCATTGTGCAAGCTCAAGTACAAAAAGCGGCGATATATGAGAAAACATTTCTTACAACACCAGAAGAAATATGCCTGCAAATTATGTGATCGCGAATGTACTGCTGTGAGTCAAGCCAAGCAACATCAAGATTGGCACAAAGGTGTTACATACACGTGCAAACTCTGTGACAACATTTTCGCAGCTTGGTCATCGTACATGAATCACATGCGTAAAAAACATCCATCGGACTTCATTTGTGCCATTTGCGGGTACTCCTTCATCAGTAAACTGGGACTTTCGATGCACAAAACAATGATGCATATAGAACTTAAGGGTAAGCGGCTAAACGAAGACGGTCCGTACTGTGAGGAGTGTGACGTGAAGTTTGTATCGAAAGAGGCGTACAATCGTCACATGGTTATGTCTATTAAACACACTGGCACTACAAATGTTATTAATGGGTGTCGAACATGCGGGGAGAGATTCGTAAACAAGCGAGAGCTGAGACTGCACCAGCGTAAAGGACACCCTGAAAACTACGAAAAGAATCTACACGTTAAGAAATATCCAACCAAATGTGAACATTGTTCAGAAGTGATCCCCAACGGCCGTAAACACTGGTTCCACTATCGAAGCAATCACCCGAATATGAATTATCCCATTAAGAAGAACTTATGTAATGTTTGCGGAAAAACTTTCACGACCAAAACTTTCCTTGAATGCCATAAACGGACACACAACGAAGAACGAGCGTTCAAGTGCGATCTTTGCGATAAGGCGTTCTTTAATCAATACAACTTGACCCTACATCAGAGGGCCCACACTGAGTCGCGCCCGTGGCTATGCAACGTGTGCCCTAAAGCTTTTAAGGATAAAGGAGCCCTTACCAGGCACATCGAAATCCACACTGGCCTGAAACCATACCAATGTGAGATTTGTGGCCAGAGATTCTCTCAACCGAACGGTGTCAAAGGTCACATCGCTGGGATACATCATAGAGAACCCTCGGATTACACCATCCGCCGTATGAAGAATCCTTACATAGAAATTTATTCACGACTATTAAAGAAATAA
- Protein Sequence
- MEDLKVCRICLIRDVRMYDLKSYPLNDYFKPVFGKKLTIDNVPPYACYECAALIKKFYFFIEKYRQSYSTLNDLLNYIGELKFSGLNMLDHEYRQLSSNLTISDIQKLATCCIEDKCKNKLEDAESIKDKDADDLDYAEDNDDDFLPTKDVESDDNDDPLSLLEVKYYEEIQVDQKTKKSKTLKSTKTSVVPAKRKRSCVAQMDNVNKIKYEARADDLIDTGIDTENNVTVGNRTAEEQLEEINKKKQLVNYLNSRYKCNLCLRGFIEKESWKHQTHSALVTIDDVPPYACYECAALLKKFYIFRKKCLRSYTILKGLLNYNGEIKFSELNMLDRNYLQLSSNLTMSDTQNLATCCIEEKNSQSEPKHEKSIEDNDDDHFDYEEDNDDVYLSTKEVESSDNDDSLSLLKVTDYGEIEITRITKNSMSEPIKTSLVPVKRKRGPQARMADVKHVKYEARADHDTYLIDNGIDTENYVTVINLTPKEQIQEMNKRRQSASYLNSRYKCNLCYRGFIDTEAWNHHLKKHSTVSGDHECPLCKLKYKKRRYMRKHFLQHQKKYACKLCDRECTAVSQAKQHQDWHKGVTYTCKLCDNIFAAWSSYMNHMRKKHPSDFICAICGYSFISKLGLSMHKTMMHIELKGKRLNEDGPYCEECDVKFVSKEAYNRHMVMSIKHTGTTNVINGCRTCGERFVNKRELRLHQRKGHPENYEKNLHVKKYPTKCEHCSEVIPNGRKHWFHYRSNHPNMNYPIKKNLCNVCGKTFTTKTFLECHKRTHNEERAFKCDLCDKAFFNQYNLTLHQRAHTESRPWLCNVCPKAFKDKGALTRHIEIHTGLKPYQCEICGQRFSQPNGVKGHIAGIHHREPSDYTIRRMKNPYIEIYSRLLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -