Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411826.1:12388921-12410923[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00077 0.072 14.3 1.2 1 23 236 258 236 258 0.98

2 12 0.14 13 7.2 0.7 1 23 265 288 265 288 0.94

3 12 0.82 76 4.8 3.2 1 23 292 314 292 314 0.97

4 12 0.0026 0.24 12.6 0.7 1 23 319 342 319 342 0.93

5 12 0.0037 0.34 12.2 1.5 1 23 346 369 346 369 0.97

6 12 0.00051 0.048 14.9 1.2 1 19 381 399 381 401 0.96

7 12 0.0027 0.26 12.6 0.9 3 23 415 435 413 435 0.96

8 12 7.4e-06 0.00069 20.7 0.3 2 23 441 463 440 463 0.96

9 12 1.1e-05 0.001 20.1 3.1 3 23 482 502 481 502 0.97

10 12 9.3e-06 0.00087 20.3 2.0 1 23 508 530 508 530 0.98

11 12 7.9e-07 7.4e-05 23.7 1.7 1 23 536 558 536 558 0.98

12 12 8.6e-06 0.00081 20.4 1.0 1 23 564 587 564 587 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00077	0.072	14.3	1.2	1	23	236	258	236	258	0.98
2	12	0.14	13	7.2	0.7	1	23	265	288	265	288	0.94
3	12	0.82	76	4.8	3.2	1	23	292	314	292	314	0.97
4	12	0.0026	0.24	12.6	0.7	1	23	319	342	319	342	0.93
5	12	0.0037	0.34	12.2	1.5	1	23	346	369	346	369	0.97
6	12	0.00051	0.048	14.9	1.2	1	19	381	399	381	401	0.96
7	12	0.0027	0.26	12.6	0.9	3	23	415	435	413	435	0.96
8	12	7.4e-06	0.00069	20.7	0.3	2	23	441	463	440	463	0.96
9	12	1.1e-05	0.001	20.1	3.1	3	23	482	502	481	502	0.97
10	12	9.3e-06	0.00087	20.3	2.0	1	23	508	530	508	530	0.98
11	12	7.9e-07	7.4e-05	23.7	1.7	1	23	536	558	536	558	0.98
12	12	8.6e-06	0.00081	20.4	1.0	1	23	564	587	564	587	0.98

Sequence Information

Coding Sequence: ATGGCATATCTTCTAGCTTGCCGTGTGTGCCTCGCTACAGATGTAAAACTTTATAATATGCACAGCTACAACTTGCACACAGTTTATGAAAATCTCACTGGTATCAGCGTAACAATTCCAGACAGATACCCGCACTACATATGCACTTACTGCAAATGTCTTCTTCTCAAGAGCAACAGTTTTAAGGAGACATGCATACATACCCACCAGCTACTTAAGTCTATTACAAATAAACTCACGCAGAAACACATAACATCACTATATGAATCACAACCACCCGTTCACTCTTTAAGCACTATTACTATCCATGATATGGCCAAGTTGGAAATAGAAGAATCACCTGTAAAAGAAGAGTTGCCAGTTCATACTGACGAAAAATCCTCAATCAAAAAAATTAAGTATGAGAAGGATATTTTAAATTTTGAATTTAGTGATGCTACTTTAGAAACGGTAGAACCGAAGGTTGAGGCCTCTGAATTGGTAGACACTTACAATATAGGTAAAACAGAATATTCTGAATTTGAAATTGAGACACTGCAGACTGTGGATATTGAGACATTTGAAACCATGGATTTTGAGACAGATGTCATTGAACCACAAAATGAACTAGAAACAAAGGAAATGGATATAATAGTTTTGAGTAAAGAACAACAAGTTGAAGAGGTGCTCGCTAGAAAGGATTCAGTTAACTATCAAAATTCATTTTACAAGTGTGAATTATGTTTTAAAGGCTTTATGACTGATGGTACCTTTAGAAATCACATGGCCAGACATGATGTGAGTGCAGGACCTCATATATGTGACGTATGTAACACAAGATGGCCGAATAAACGTTCTTTAAAATCTCACTCTGCGACTGCCCATGAGAGAAAATATATTTGCAAAATGTGCAATCACGTAGCAAGGTCGTTTCACAAGGCAAAGGAACATATAAAATGGCATAAAGGCCATTGTTATGTTTGCAATATATGTGGAGCATCCTTCTCTAAGCCTACCAGCCATCTCACTCATGTAAGGTTACAGCATCCATCGGAATATTGCTGCGAGTTCTGTGGAGATAGTTTTATATCACAAAATGGCCTCAATATACATAAGAAGAAGGCTCACTCGAGAGATGAGGAATCACAATTTAAATTAAAGTATGAGTGCACTCATTGTAATACGAAGTTTAAAAATGCTGAAGCTTTAACATACCATAATGATATCACTGAGGATGGTAGTTGTGACCCTGCATTAAGCCACTGTCCCCAGTGTGGGGACTATTTTGAAAGCCAGGAGGCATTGAGACAACATCTCAAGTACCACAAAGAAGAGCCGGTTAGGTGTGACGAGTGTGACAAAACATTCTCGCAAGAGCGCTCATTAGCAGTTCACTATCAAAGAGTACATCTAGGTATCAAAATGAAAAATAAAAGGAAGGAGGGTTACAAGCCCGTGGCTATGTGCGAAGTATGCGGCAAGAAATGTACTTCTAATTCAGCGTTGATACACCATCAGCGGATCCACACTGGTGAGAAGCCATTCCACTGTAGGGAGTGTCCGAAGAGCTTTAGTGTCGCTCAGAGACTACAGATCCACATGAGAACCCATACTGGTGAGAGACCGTTCAAATGTTCCGTGTGCCCTAAGGCTTTCAAGCATAAAGCAGCTTTGAATAGACATAATAGGGTACATACCGGCGTTAAACCTTATCAATGTTCTTACTGTGTCAAGGCGTTCTCCCAGTCGAATTCAATGAAACTTCACGTACGTACGGTCCATTTGAAAATGCCCACCCCCTACAGGAGTAGGAAAGTGGTTAAAAACGATGAAGATTAA
Protein Sequence: MAYLLACRVCLATDVKLYNMHSYNLHTVYENLTGISVTIPDRYPHYICTYCKCLLLKSNSFKETCIHTHQLLKSITNKLTQKHITSLYESQPPVHSLSTITIHDMAKLEIEESPVKEELPVHTDEKSSIKKIKYEKDILNFEFSDATLETVEPKVEASELVDTYNIGKTEYSEFEIETLQTVDIETFETMDFETDVIEPQNELETKEMDIIVLSKEQQVEEVLARKDSVNYQNSFYKCELCFKGFMTDGTFRNHMARHDVSAGPHICDVCNTRWPNKRSLKSHSATAHERKYICKMCNHVARSFHKAKEHIKWHKGHCYVCNICGASFSKPTSHLTHVRLQHPSEYCCEFCGDSFISQNGLNIHKKKAHSRDEESQFKLKYECTHCNTKFKNAEALTYHNDITEDGSCDPALSHCPQCGDYFESQEALRQHLKYHKEEPVRCDECDKTFSQERSLAVHYQRVHLGIKMKNKRKEGYKPVAMCEVCGKKCTSNSALIHHQRIHTGEKPFHCRECPKSFSVAQRLQIHMRTHTGERPFKCSVCPKAFKHKAALNRHNRVHTGVKPYQCSYCVKAFSQSNSMKLHVRTVHLKMPTPYRSRKVVKNDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -