Lsal002806.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411830.1:1578835-1582291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0029 0.27 12.5 1.0 1 23 204 227 204 227 0.94 2 17 7.4e-05 0.0069 17.5 3.4 1 23 232 254 232 254 0.98 3 17 0.0063 0.59 11.4 1.4 1 23 284 307 284 307 0.96 4 17 0.0044 0.41 11.9 1.3 2 23 368 390 367 390 0.96 5 17 0.00073 0.068 14.4 0.7 1 23 396 419 396 419 0.93 6 17 9.1e-05 0.0085 17.2 0.5 2 21 423 442 422 443 0.93 7 17 0.00078 0.073 14.3 0.2 1 23 451 474 451 474 0.94 8 17 2.3 2.1e+02 3.4 1.2 1 23 479 502 479 502 0.92 9 17 0.0072 0.67 11.3 0.3 2 23 515 536 514 536 0.96 10 17 0.0051 0.48 11.7 1.5 1 23 542 564 542 564 0.97 11 17 0.0095 0.89 10.9 2.5 1 23 600 622 600 622 0.96 12 17 0.14 13 7.2 0.1 3 23 628 648 627 648 0.92 13 17 0.0052 0.48 11.7 1.9 2 23 663 685 662 685 0.96 14 17 0.0002 0.019 16.1 0.9 1 23 691 713 691 713 0.98 15 17 0.00042 0.039 15.1 5.1 2 23 720 741 719 741 0.96 16 17 3.2e-05 0.003 18.7 2.3 1 23 747 770 747 770 0.97 17 17 0.81 76 4.8 1.1 2 23 776 798 775 798 0.95
Sequence Information
- Coding Sequence
- ATGCAGGAATTGAGAACTGAAAATGATTGGGAGAATTTGAGCTGGTTGAAACAAAAACTCCAGGCTTTATGGTCTGTTCCAAAGTTTTGTGGTCTCTGCATGGAATACAACAGAAGCATTTGTCCTGTCGACATGGAATTAGTCATCAATAAACAAACATTTTCTAGATGTCTAAAGGATATTCTTAATTATATATTTAATGATGATTTGTCACAAATCATAAACAACAGTGTTGCTGATGTGTATTCTAAAGTCATTGACGTTGATGATCAGCTCGAAAGTGCAACCGACTATGGCAATGCTAACCTTATGATTGTTCTAGAGAATGATATGGATTTATATAAAAGTATCATTGATACAAGAGTGATTGAAATCGTACCAACTGCTACACCTATACCAATGAGGAAAGAAACTCAAAAGCCAGAGCCTAAGACAGAAGTAGTAGTAAAAACGGAACCACAAATTGAGAATATTAAACATACAGAACCAATAAAAGTTGAGAGCAAACCGGAGTCAAATATTATTACACCAAATATAACTCTAAAAAAAGGTCATTTGGTAATAAAACCTTTAAGTTCATTAATGAACGTAACTCCTTGTTACAATACATATCAATGTGTAAATTGTTCAGAAATCTTCACGACTTACAGAACACTGAAAGAACATGAGAAAGCAAAGCATAAAAAGTCCGTCTTCAGCTGTAATTTATGTCAAAAGACATATAATACTCGTCAATATTTGAATATACATTATAAGACTCACAAAATGATCAAATGCAAGTTTTGTCAAACGCTATTACCAGAAGGAGAACTGGTGGATCATTTAAAAGCCAATCATCCTCACTTAATATTTCCTTGTAAATTCTGTGATCTAGTTTACTATACTCAACTTTCTTTAAACACACATTTCAATAGCACTCATTTAGTTAATAATACCAAAGCAAAATCTCAATGTGTTATGTGCTTAACAAATATCAAAGACAGTAAAATTAAATTTCATAGATGCAAGTTCACTTGCTCCGAGTGCTTTGTTATGCCCTGTATACATCATAAGTATCTCATGTCTTACAGAGAACAGATTCTAAATCATGCTAATAATGTGAAATGTTTGGACTGTCACTATGTTACCGCAAGAAAAGAACATCTAATTGGTCATGTGAACAGAGAGCACTTAGACCACCATCCTTTTATATGTGCCGATTGTGGACAACAGTTTTACACCAAACTAAGTTTAAAGACTCATTTAGCACAATTCCATCAAGATTTAAACTGTGAATACTGTGATTTTGGATTCAAAGACAAAAGTAGTTTAGAAAATCATAGAAAAATGTGTAAATCTGTTACAAGGGCATATAGCTGTAATTATTGTCCGGCATCTTTTGATGCCAAAGAGGAGTTGACCAATCATGAAAATTTGAAGCACAGTTCAAGCGTTCACCCTTGCAATCTATGTAAAAGTAAGTTCCTCTCACAGGTAAAATTGGAAGAACATAGAGTAAGGGTGCATGGAGGTATCCAATACAAAAAGCGTAGGAAACATATTGAATGTTCACTGTGTAATGTAATGTTTAAAAACCTCAAAGAAATGCTTAACCATGAGAAAGTACATGAGTCAAACAAAATATATCCTTGCAAAGTATGTTCAAAACAATTTAATAGTTTAATGAAATTGTATGTGCACAATCAAAAGCACTATTCTAACAAAATAAAATGTACCTGTTGTAATAAAATGGTAACTGCATCGTTTTATCCGCAACATGCTGTTACATGTCCCTATAAGAATCAAGGATCATTAAAACATGTTTGTGAAATATGTGGGAAAGGATTTCATGTAGAATCATTGTTAAAATTCCATCAAAAAAATCATTTGGAACGTGAGCCTTGTCCTCAATGTGATAAATATATAAAACCAACGAGCTTAAAGAGTCATATGGAACAAGTTCACAAAGAATACACCAAGAAGTCAACTAACAAGCAGCCTACAATGGAATGTGAATTATGCGGTCATTTGGTTAGAAAGAAACATGATTTAGAAGCTCACATGAATAGATATCATTTGAAAATCAAACCGTATGTTTGTAATATATGCAAAAAAGGTTTCTGTGGCCAAATACGTTTGAAAGAACACATAGCTACTCATTCTTCAAACAATAATTGTTTTTGTTCAGTCTGCGGTAAAAAGTTTGCTAACCGTGTTTGCTTAAAAATGCATTATAGAATTCACACTGGTGAATCACCATATACATGTGATGTATGTGGACAGAAATTTAGGTCGTCTAGTATGATGAAGACCCATCGGCTAAAAAAACATTGGTCCAAAACTGTACAATGTCCATTATGCGATAGTATGTTTTATATAGTGAGAGATATGCGTCATCATTTCAAGAAGGTCCATTGGAAGTTCAAGGATAGACCGTTCAATGTGAGAGAAGTTCGAGAATTGAGTGAAGAGTTCTATCCTTTATTTGAAGATGGAAGATTGCCTAAATTGGATACTTGA
- Protein Sequence
- MQELRTENDWENLSWLKQKLQALWSVPKFCGLCMEYNRSICPVDMELVINKQTFSRCLKDILNYIFNDDLSQIINNSVADVYSKVIDVDDQLESATDYGNANLMIVLENDMDLYKSIIDTRVIEIVPTATPIPMRKETQKPEPKTEVVVKTEPQIENIKHTEPIKVESKPESNIITPNITLKKGHLVIKPLSSLMNVTPCYNTYQCVNCSEIFTTYRTLKEHEKAKHKKSVFSCNLCQKTYNTRQYLNIHYKTHKMIKCKFCQTLLPEGELVDHLKANHPHLIFPCKFCDLVYYTQLSLNTHFNSTHLVNNTKAKSQCVMCLTNIKDSKIKFHRCKFTCSECFVMPCIHHKYLMSYREQILNHANNVKCLDCHYVTARKEHLIGHVNREHLDHHPFICADCGQQFYTKLSLKTHLAQFHQDLNCEYCDFGFKDKSSLENHRKMCKSVTRAYSCNYCPASFDAKEELTNHENLKHSSSVHPCNLCKSKFLSQVKLEEHRVRVHGGIQYKKRRKHIECSLCNVMFKNLKEMLNHEKVHESNKIYPCKVCSKQFNSLMKLYVHNQKHYSNKIKCTCCNKMVTASFYPQHAVTCPYKNQGSLKHVCEICGKGFHVESLLKFHQKNHLEREPCPQCDKYIKPTSLKSHMEQVHKEYTKKSTNKQPTMECELCGHLVRKKHDLEAHMNRYHLKIKPYVCNICKKGFCGQIRLKEHIATHSSNNNCFCSVCGKKFANRVCLKMHYRIHTGESPYTCDVCGQKFRSSSMMKTHRLKKHWSKTVQCPLCDSMFYIVRDMRHHFKKVHWKFKDRPFNVREVRELSEEFYPLFEDGRLPKLDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -