Lsal013336.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411804.1:26873433-26880863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5e-05 0.0014 19.7 1.2 2 23 145 166 144 166 0.97 2 9 0.0016 0.15 13.3 5.7 2 23 174 195 173 195 0.97 3 9 0.0003 0.028 15.6 0.4 1 23 201 223 201 223 0.98 4 9 1.5e-06 0.00014 22.9 1.3 1 23 229 251 229 251 0.97 5 9 1.3e-06 0.00012 23.0 1.7 1 23 257 279 257 279 0.97 6 9 9.4e-06 0.00088 20.3 1.2 3 23 287 307 286 307 0.98 7 9 3.9e-07 3.6e-05 24.7 2.0 1 23 313 335 313 335 0.98 8 9 0.0088 0.82 11.0 1.1 3 23 343 363 341 363 0.97 9 9 2.6e-05 0.0024 18.9 4.6 1 23 369 391 369 391 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTTAAGAAAATTTGTCGTGCCTGTTTATCGGACACAGGGCCAATGAGAGACTTGTTTGCTGTTTGTACCGCTGAAGTATTCCAATTTTGCACATCTGTAGAGGTTTCAGTAGAAGATGGTTTACCTAGACAAGTTTGCCACCCATGTCTTGACCTACTAAACAAAGCATACTTAATAAAACAGACAGCTGTTAAATCTGATGAGATTTTAAAACAGAAATTGTTGGAAAAGCAACAACAAGTGAATATACAAGCAGAAGATAGCGAGAATAATGTACTAGTCGCAAATGAAATTGAAATTACTAGTGAATCATTGGGAACCACTCTCCGTAATGTTTCACATAACAATCTGGAACCTGCTGAAATTATTAGGAGAATCCGTAGGAGGCGAGAACTGTCAAAATCACTTAAAAAAGATAAAAGAATGAAATGTCCCAAATGCGAAAAATCATTTCAGAAATATGAAAATTTTGAAGCACACCTGAGAAATCATTTTGGAAAGAAACCAGATATAAAATGCGATCATTGTGACAAAACGTTCCTTACACTGCGTAATCTACACAGTCATTCACGAACACACACCGGCGTGAGAAAATATCAGTGTTTGACGTGTGGAAAGAATTTTGCTTACCTCAACGTATTGAAGAACCATGAAATGATACATTCAGGTGTGAAGAAACATATTTGTGAGATATGTGATGCTAAGTTTGTGCAGAGATATAACTTGATGACTCACTTAAGAACACACACTAATGAACAGAACTATATCTGTGCCCAGTGCGGCAAGAAATTCTCACAACATGGGAATCTCAAGAGTCATTTGATTAGGCACACTGGTATCAAGAATGAAGCTTGCCAGGTGTGCAATATGAGGTTCTATGTTAAGAGCGATCTTTTTAAACATATGAAGACACATTCAGCAGATAAACCTTTCTCGTGTGAATATTGCGACAAAACATTCAAAAATAAAAGTTTCATAGTAATACATATGAGAACTCACACAGGTGAACGTCCTTACGGCTGCGACATTTGTTCAAATCGTTTCATGACACGCAAAGATATGAAGAATCACCGAATGATACACACGGGCGAGAAGCCGCACAAGTGTCCGTTGTGTGACCACGCCTTTATACAGAAGTGTGCGCTCAATAGGCACATGAAAGGGCACGCGCACGACGACACTAGTAAACCTAAGCGGAGATTACTGATAGCTAGGTTAGAAGGAGCAGAATGTGCCGAGTGGGTCAATGTGTGA
- Protein Sequence
- MEFKKICRACLSDTGPMRDLFAVCTAEVFQFCTSVEVSVEDGLPRQVCHPCLDLLNKAYLIKQTAVKSDEILKQKLLEKQQQVNIQAEDSENNVLVANEIEITSESLGTTLRNVSHNNLEPAEIIRRIRRRRELSKSLKKDKRMKCPKCEKSFQKYENFEAHLRNHFGKKPDIKCDHCDKTFLTLRNLHSHSRTHTGVRKYQCLTCGKNFAYLNVLKNHEMIHSGVKKHICEICDAKFVQRYNLMTHLRTHTNEQNYICAQCGKKFSQHGNLKSHLIRHTGIKNEACQVCNMRFYVKSDLFKHMKTHSADKPFSCEYCDKTFKNKSFIVIHMRTHTGERPYGCDICSNRFMTRKDMKNHRMIHTGEKPHKCPLCDHAFIQKCALNRHMKGHAHDDTSKPKRRLLIARLEGAECAEWVNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -