Lsal002835.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411830.1:2410227-2438985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.8 3.6e+02 2.7 1.1 5 15 57 67 55 70 0.73 2 12 3.7 3.5e+02 2.7 0.4 1 23 479 501 479 501 0.94 3 12 0.00012 0.012 16.8 0.2 1 23 514 536 514 536 0.97 4 12 0.003 0.28 12.4 3.5 1 23 542 564 542 564 0.99 5 12 1.1e-05 0.001 20.1 2.2 1 23 571 593 571 593 0.99 6 12 1.2e-06 0.00011 23.1 0.2 1 23 599 621 599 621 0.93 7 12 1.6e-06 0.00015 22.7 0.3 1 23 627 649 627 649 0.98 8 12 3e-06 0.00028 21.9 1.6 1 23 655 678 655 678 0.96 9 12 0.00014 0.013 16.7 3.7 1 23 684 707 684 707 0.96 10 12 4.1e-06 0.00039 21.4 3.4 1 23 713 735 713 735 0.99 11 12 2e-05 0.0019 19.3 1.0 1 23 741 763 741 763 0.97 12 12 0.00082 0.077 14.2 0.2 1 23 769 793 769 793 0.94
Sequence Information
- Coding Sequence
- ATGAACCCGTGCTGCTTCATATGCAACAACAGGGCAGGTTTATCACTTAGAAATGCCATCAGTATCTTTGCAGAATCGAATGCATTAATGTCTGGCAATAAGCTGGCAGAAGTAATAAGTGAAATTGTTGGTAAAACTCTCGAAGAGAATAAAATTCATGCCAATGTAATTTGCAAGAAGTGTTTCAAATCCTGTTCAGAATATGATCTAATTCAAACTAGGTTACAAAAAATTAAAGATGAGTTGCTTAGTCAATTCAAAGAATCGTTAATAAGCCACAAGATAGAATATGATAATTATGAGGATACTGTTTATGAGAGCTGTACTTCACCTCCACCTGTAGTAAAACAGCCTGTCATATTGGGCAAAAAGTTGGTGCTGCCAGCATCAAAACTGCAACCTGTACCACCAGCTTTACTGTTAAAAGTGGGACAATTGCCTATGGCATCTAAAAATAATATGATTTTACCACAATTTAAGCCCGCAAATGCCTCAACTGTAAATCTAAAAGTGACAGTAGGGTCCTCTGTGCTGACCCAAACGATCAAAACTACTACCCCTAGATCAGAACAACCTTCAATAAAGAGCCTACCGTCTCTAACAGACTCCGATGACATAGAAAATATCATCACATCACAAGCTCAATCTACATCTAAAACATCCATTATTAATTTCAATGTCAATTCGCTGCCAAACAATTTCTTTTCTGAAGCGGTTTTAACGAAAATTTCTGATGATGATGGTGATAAGGGGGGTGATACTATGGAGATTGATGAAGATACATCCCTCTCTCTGGTGCCCGTTTCATCAACTGATGGCAGTAATTTGGTGTTAAAAGTGGATGGAGTTCAGTCAAACCAAATGTCTCCATCACTGGACGATGCAAACGAACAGCAAAAGTTTATAGTGGGCAATGTGCAGATACTGAAACAGGAGGATGGTATAGATGACGACGAGGAAAGCCatacaatagtcctggACAGTGAAGATGGTTCAATACTGCGGATGGTGTCCGGTCAGAAGTTTATATACGAAGGTGGTGAGATATCCCTCATGATGGCAGAAGAAGAAGAAGACGAGGAGGAGGAACAGCAGCCGGACGATCAAAATGACTTGAATGAAGGACAAGATTCAAATGACGAGACAGCTATCGAGCTGCAAATGGCCGGTGATGAAGAAACTGCCAACGCTATTTTAGCGGCTGCACAGGAACAAGGAGGGGCGTTTATTAAAGTGGAGTCAGGAGAGATGTTTCGGGTCAAGACGGTAGACCGAGGCCAGGGGGAAGCAATACCGAACCTCGTAGTCAAGGACGGTGACAACTTTACGTGTCTACTCTGTGAAAACATTAAAACAGATGAAAACGGCCCAACAGTGACAGGAGATGCGGAGTCGATTATGCGTCATCTCAAGCGCTTCCACGACGCTCGCATATACATCTGTCAGTTCTGCTCGGCTATCATGAGGAAACGGACTGAATATACAACTCATATAGCGGAACACGCATCTAAACTAAAGCTAGGCAATCCTCGAGCGAACCACGTGTGTTCGACGTGCGGCAAGGCGTTCGGTAGCCGTGTGCTACTACAGGAGCACGCCAACGTACACGCTGGAGTGCGGCCGTACCGCTGTGGGCTCTGTGCCAAGAGCTTCACGTCCAAGTACACGCACCAGGCGCATCTCAAGACTCACGGGAACCGCCCCCGTCCGTACAGATGCAACCAGTGTGGCAAGTCGTTCCTGACTCAACAGAATCTAAACCAACACGAAAAAACACATTCCGGGTCCAAAGATTTCATTTGCAATATCTGCGGCAAGGCGTTCAGTACACAGCACAACCTCGAAGTGCACGGCGTAGTGCACTCAGGGAACAAGGCGTTCGCGTGCACTATTTGTGAGAAGGCCTTTGCGCGCCGAGCTGAACTCAGAGACCACACCAGGACCCACACTGGTGAGCGTCCCTTCGAGTGCGACATATGTGGAGCTCGCTTCACCCAGCGGTCGAACCTGCATTCACACAGGCGGGCGACACACCTGGATGACAAACGGTACCACTGTACGCAATGCCCCAAGAGATTCAAAAGGAGAAGGTTGTTAGAGTACCACATAAAGGCGACCCACACGGGCGAGCGACCGTTCAAGTGCAATTTCTGCGGAACCTCGTTCGTGTACCCAGAGCACTACAAAAAACACTTACGCATTCACAGTGGGGAAAGGCCTTATGTTTGTGAGGTGTGCGGCAAATCGTTCAACTCCAGAGACAATCGCAACACACATCGGTTCATACACAGCGACAAGAAACCATACGAGTGCATGACTTGCGGCGCCGGCTTCATGAGGAAACAACTGCTTTATGCGCACATGAACACCAGCGGTCATTTAACCCAGTCGATCGTAGTCAACCAGCCGAGACTAAACAAGCCCATAGAAAATAAATCGAGCACATTGGATATTGAAAAAGAAGTAACGCAAGACACTGTTAAATTTGATACGATATTTGAAGTCATAGAAGACGGTTCCAAATCTGACAATATGAAAGTGGATGATTTGGAGCAAATAAAGTTGATGTGTAACATTATAAGTGAAGATAAGAAACTTATTTTACAAGAACCGGAGAAAGCTACTTTGAATTTAATTCAAGAGAACGACGATTCCACTCTATTGACTATCCATAATTTGGAAGAGCGATCACAGTCCATCTTAGATGCAGTTACTGCTGACCAACTCGATGAACAAACCGAGTTGGTGGCGAACGCAGACAACGGAGATGTAGTCCGTTTGATACAGATCAAGTTGCCGGACGGAAGCAACGGATGGGTCGCGCTTAACCACCGCGACAACGTGCTGTCTACGTTATAG
- Protein Sequence
- MNPCCFICNNRAGLSLRNAISIFAESNALMSGNKLAEVISEIVGKTLEENKIHANVICKKCFKSCSEYDLIQTRLQKIKDELLSQFKESLISHKIEYDNYEDTVYESCTSPPPVVKQPVILGKKLVLPASKLQPVPPALLLKVGQLPMASKNNMILPQFKPANASTVNLKVTVGSSVLTQTIKTTTPRSEQPSIKSLPSLTDSDDIENIITSQAQSTSKTSIINFNVNSLPNNFFSEAVLTKISDDDGDKGGDTMEIDEDTSLSLVPVSSTDGSNLVLKVDGVQSNQMSPSLDDANEQQKFIVGNVQILKQEDGIDDDEESHTIVLDSEDGSILRMVSGQKFIYEGGEISLMMAEEEEDEEEEQQPDDQNDLNEGQDSNDETAIELQMAGDEETANAILAAAQEQGGAFIKVESGEMFRVKTVDRGQGEAIPNLVVKDGDNFTCLLCENIKTDENGPTVTGDAESIMRHLKRFHDARIYICQFCSAIMRKRTEYTTHIAEHASKLKLGNPRANHVCSTCGKAFGSRVLLQEHANVHAGVRPYRCGLCAKSFTSKYTHQAHLKTHGNRPRPYRCNQCGKSFLTQQNLNQHEKTHSGSKDFICNICGKAFSTQHNLEVHGVVHSGNKAFACTICEKAFARRAELRDHTRTHTGERPFECDICGARFTQRSNLHSHRRATHLDDKRYHCTQCPKRFKRRRLLEYHIKATHTGERPFKCNFCGTSFVYPEHYKKHLRIHSGERPYVCEVCGKSFNSRDNRNTHRFIHSDKKPYECMTCGAGFMRKQLLYAHMNTSGHLTQSIVVNQPRLNKPIENKSSTLDIEKEVTQDTVKFDTIFEVIEDGSKSDNMKVDDLEQIKLMCNIISEDKKLILQEPEKATLNLIQENDDSTLLTIHNLEERSQSILDAVTADQLDEQTELVANADNGDVVRLIQIKLPDGSNGWVALNHRDNVLSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -