Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411817.1:6039393-6044419[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.3e-05 0.0022 19.1 0.6 3 23 157 177 155 177 0.97

2 12 0.46 43 5.6 2.1 1 23 181 203 181 203 0.91

3 12 0.0011 0.1 13.8 0.3 2 23 218 239 217 239 0.96

4 12 0.00051 0.048 14.9 3.5 2 23 247 268 246 268 0.96

5 12 0.00055 0.052 14.8 0.2 1 23 274 296 274 296 0.98

6 12 0.021 1.9 9.8 2.5 1 23 302 324 302 324 0.96

7 12 1.2e-07 1.1e-05 26.3 1.0 1 23 330 352 330 352 0.96

8 12 1.5e-05 0.0014 19.7 0.2 1 23 358 380 358 380 0.98

9 12 0.0002 0.019 16.2 0.4 1 23 386 408 386 408 0.97

10 12 1e-06 9.6e-05 23.3 3.5 1 23 414 436 414 436 0.99

11 12 1.5e-07 1.4e-05 26.0 1.0 1 23 442 464 442 464 0.99

12 12 2.2e-05 0.0021 19.2 1.1 1 23 470 492 470 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.3e-05	0.0022	19.1	0.6	3	23	157	177	155	177	0.97
2	12	0.46	43	5.6	2.1	1	23	181	203	181	203	0.91
3	12	0.0011	0.1	13.8	0.3	2	23	218	239	217	239	0.96
4	12	0.00051	0.048	14.9	3.5	2	23	247	268	246	268	0.96
5	12	0.00055	0.052	14.8	0.2	1	23	274	296	274	296	0.98
6	12	0.021	1.9	9.8	2.5	1	23	302	324	302	324	0.96
7	12	1.2e-07	1.1e-05	26.3	1.0	1	23	330	352	330	352	0.96
8	12	1.5e-05	0.0014	19.7	0.2	1	23	358	380	358	380	0.98
9	12	0.0002	0.019	16.2	0.4	1	23	386	408	386	408	0.97
10	12	1e-06	9.6e-05	23.3	3.5	1	23	414	436	414	436	0.99
11	12	1.5e-07	1.4e-05	26.0	1.0	1	23	442	464	442	464	0.99
12	12	2.2e-05	0.0021	19.2	1.1	1	23	470	492	470	492	0.97

Sequence Information

Coding Sequence: ATGGATCTCAATGTGCATGGTAAAATTTATAACCACTGTTGTCGCACATGTTTACATGAAGATTCAATTGAAATGTTTGATATCTTTGAACTCAATAGAAAGAATGACACAGTAAATATATATGAAATATTGTCTACATACACACTACAGATCACAATAGAGGATCAGCTACCTAAGAAAATATGTATTAATTGTTACAACTGTTTATTAAGTTTTCATAATTTTCTGAATGTTGCTTTAAAAGTTGAAACAAAGCTGAAAGAGTATATCAGACAGTATCAAACTATAATAGTTAGAGAAGATGAGGATAAACACTTATATCAAGAAAACAGATGTGATTCTGAAGCACCTCCAAAAATAGATAAAAGTGTGGGTTACAATAGTTATTTATTGGAAGATAATATAGAAAATAATAGTTTATCAAGTGCTCAAGGGATCATTGAGATATCTGAACAGAAAGAAGTGAATTGCCAGTTTTGCAATGAACAGTTTAAAAATAACGCAAATCTTGAACAGCACTTGTTGACACATACTAAGGAATACAATTGCATTTGGTGTACAGAAACTTTTAGAAACTGTACTAAATATATTGAACATTTAGGCAAACATAATCAAAATAATACTCAAGGAGAAAATCAAAATGATAAACTAGTATGCGAGATTTGTTCTTTAACTTTCAAATCAATACCGTCTCTATCAGCTCACAAAAAGAAGCATACTGCCAAAGATAGAGTGTTGCAATGTAAAGTATGCAGTAAATTATTTAAAAAAATTAGTCATTTAAAACGTCATGAACTCAGCCATATTGATAACCGTCCTTTTAAATGTACATTATGCCCGAGATCATATGCTTCAGAAGATATTTTAACTGCTCATTTAAATAAGCATAACGGTATAAAGACCCACTGTTGTCCGATATGTATGAGAGCGTTTGATAATTTGAGAGTTCTGACTAATCATATAAAAAATCATACAAGAAACAAGTCATATTTGTGTCCGACTTGTGGTAAGATGTTTGAATCGAGTACTAACTTAAACCAGCACATGAAAAGACACGAGGGCTTGAAGTTGTTTTCTTGCAATTTGTGCCCTAGGGCATTTGTTAGTAAAGGTGAATTAAAATCTCATGGGCTAACTCATAGTGGTGAAAGATCATTTGCCTGCGACCAGTGCAATGGAGCTTTTCCAAAACGCAGTTCTTTAGAGAAGCACAAGTTGACGCATTTAGGGCTTAAACCATATCAGTGCGATGTGTGCAATGTGAAATTTTCAGACAAAAATCATTTGAAACGCCACTACAGAATACATACGGGTGAAAAGCCTTACCGTTGCGACATCTGCGATCGAGCATTCACACAGAGTAATGACTTGGTCAAGCATAAGAGAACACATTTAGGAAATAATTTGTATAAATGCGACGAATGCAGCCAAAGTTTCAGATTGAAAACAGAACTACGTCAGCATATTTCGGAACATTTTATATCAGCGCAGTTGGCTTCTAAATCCGGCGGGAATACAGCACCTCAATATGTACAAGAATGTGATAGTAGTATAATAGATTATTGTTAA
Protein Sequence: MDLNVHGKIYNHCCRTCLHEDSIEMFDIFELNRKNDTVNIYEILSTYTLQITIEDQLPKKICINCYNCLLSFHNFLNVALKVETKLKEYIRQYQTIIVREDEDKHLYQENRCDSEAPPKIDKSVGYNSYLLEDNIENNSLSSAQGIIEISEQKEVNCQFCNEQFKNNANLEQHLLTHTKEYNCIWCTETFRNCTKYIEHLGKHNQNNTQGENQNDKLVCEICSLTFKSIPSLSAHKKKHTAKDRVLQCKVCSKLFKKISHLKRHELSHIDNRPFKCTLCPRSYASEDILTAHLNKHNGIKTHCCPICMRAFDNLRVLTNHIKNHTRNKSYLCPTCGKMFESSTNLNQHMKRHEGLKLFSCNLCPRAFVSKGELKSHGLTHSGERSFACDQCNGAFPKRSSLEKHKLTHLGLKPYQCDVCNVKFSDKNHLKRHYRIHTGEKPYRCDICDRAFTQSNDLVKHKRTHLGNNLYKCDECSQSFRLKTELRQHISEHFISAQLASKSGGNTAPQYVQECDSSIIDYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -