Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411831.1:2678752-2688624[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.12 11 7.5 0.2 5 21 223 239 221 240 0.94

2 12 0.017 1.6 10.1 0.8 2 23 264 285 263 285 0.96

3 12 0.00077 0.072 14.3 3.3 1 23 299 321 299 321 0.99

4 12 4.1e-05 0.0039 18.3 1.1 1 23 329 352 329 352 0.96

5 12 3.4e-05 0.0032 18.6 0.4 1 23 358 380 358 380 0.98

6 12 0.00045 0.042 15.0 5.9 1 23 386 408 386 408 0.98

7 12 2.9e-07 2.7e-05 25.1 1.2 1 23 414 436 414 436 0.96

8 12 6.3e-06 0.00059 20.9 0.6 1 23 442 464 442 464 0.99

9 12 6.8e-07 6.4e-05 23.9 0.3 1 23 470 492 470 492 0.98

10 12 3.9e-05 0.0036 18.4 0.2 1 23 498 520 498 520 0.99

11 12 4.4e-05 0.0041 18.2 2.1 1 21 526 546 526 548 0.96

12 12 1.7e-06 0.00016 22.6 0.7 1 23 554 576 554 576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.12	11	7.5	0.2	5	21	223	239	221	240	0.94
2	12	0.017	1.6	10.1	0.8	2	23	264	285	263	285	0.96
3	12	0.00077	0.072	14.3	3.3	1	23	299	321	299	321	0.99
4	12	4.1e-05	0.0039	18.3	1.1	1	23	329	352	329	352	0.96
5	12	3.4e-05	0.0032	18.6	0.4	1	23	358	380	358	380	0.98
6	12	0.00045	0.042	15.0	5.9	1	23	386	408	386	408	0.98
7	12	2.9e-07	2.7e-05	25.1	1.2	1	23	414	436	414	436	0.96
8	12	6.3e-06	0.00059	20.9	0.6	1	23	442	464	442	464	0.99
9	12	6.8e-07	6.4e-05	23.9	0.3	1	23	470	492	470	492	0.98
10	12	3.9e-05	0.0036	18.4	0.2	1	23	498	520	498	520	0.99
11	12	4.4e-05	0.0041	18.2	2.1	1	21	526	546	526	548	0.96
12	12	1.7e-06	0.00016	22.6	0.7	1	23	554	576	554	576	0.98

Sequence Information

Coding Sequence: ATGGAAATAAATGTGGAATTATTTGATAAAATATGCCGTGTGTGCCTAACACAATCTACGGAATTAAAATCATTATTTAACAAAGTTGACGGCGAAAACAGGAGTTTAGTGGAAGTACTAGCTTTTACTGCCAATGTTGATATAAAATTAGAGGATAGCCTGCCTAAACAAGTTTGTAATAGCTGTGAATCTATTATGTGCAAGGCTGACGCTTTTAAAAGACGCTGTCTTGATTCTGAAGCAATTTTAAACAATGTCTACCGAAATGCTACTGGCTGTATAAATTCGTCAACTACTGATAACAATATTTTTATGAAAGACGATAAATCTGATTTAAAACAAAAACTAAATGAGTTCGGTACTTATGTGTCATTTGTCCCTGCTAACAGGGCTTATAAATTCGAATTTGATAAGAAAAACATAGAATTACAAGACTTTTCAATATGCCCAACCGATAGCACTCAAAATTTTACAAATACTGGCTTTAGTACACAATCTGTAAAAAATGAAGTAATAAATAAATTTGATGATGCTGACGATTTCATGGATGTTCATGATGACGGTGACCAAATTGAAATTACTGTGGAACGACTCGAAGAAAAAGATGATGCTAAAGAGGTTTCAATTATGTCAAAAGCTAAAAAAATAGGTATAAGGTACCAGTGCTATTGTGAACTTTTCTTCTCGAGTAAAGAAGAATACAAAATTCATTTAAGAGAAAACAAATGTAAATCCATCAAAGTCATAAATATTGGTAAGAACAGGGATAAGTTGGTAAGAAACCGTCTTTACTGTCAAATATGTGATTTACATTTAGACACATCATACGCTTATAAAGTTCATCGTCTTATGCATAAAGATGAAAACACAAATGTAAACAATTGTTCAGAACTATATCAATGCTCATTTTGCTTACGTAAATTTAAGATCAAAAATCATTTAGCAGCTCACATTCAAAAACACGAAGAATCTGATAATATCAAACACGTTTGTGAAATCTGTAAACGAGAATTTAAGTACAAGGCTTATTTAGAGAATCATGTATCAACAGCGCATTCCCGTACTAACGGTTTTACTTGTGATGTGTGTGTACAAAGTTTCATAGATAAAGACTCTTTAGAGCAGCATAAGAAAATTCATGAGAATGATAAAAAACACCGTTGTACAGTATGTAATAAGGGTTTCTATATGTTATGTACGTTGAAGGAGCATATGAGGACACATACTGGGGAGAAACCATTCCTCTGTTCTCAATGTGGGCGAGGATTTAGTCAGAAGACAAACTTGGCACAGCATATGAGAAGACATCAAGGCCTGAAACCATTTAAATGTGAAACTTGCGAGAAGAAATTTGTCTCCAAAGGTGAATTGGATGCTCACGTTCGTAAACACAGTGGAGCTCATCCATTCATCTGCGACGACTGTGGCAACGGATTCACTACATCAAGTGCCCTCGTCAAGCATCGCCGTACACACACAGGAGAAAGACCATATGTATGTGATCTTTGTCCCATGAGATTTGCAGCATCCGGTACGTTGAAGAACCACAGACGAACACATACAGGGGAGAAGCCGTATCAGTGTTCATATTGTGAGAAAGCCTTCGTTCAGCGAAATGATTTAGTGTCGCACATCAGATGTCATACCGGAGAGAGGCCTTATATATGCACACAGTGCGGCCAATCTTTCAGGAAAGCTAGTGGGTTGAAGACTCACGTTAAAATGCATATAAAAGATCCTATCGTTGGCGTCAACGCCTTGTTAACAAGTATGCATTGTTCCAAGGTTTAA
Protein Sequence: MEINVELFDKICRVCLTQSTELKSLFNKVDGENRSLVEVLAFTANVDIKLEDSLPKQVCNSCESIMCKADAFKRRCLDSEAILNNVYRNATGCINSSTTDNNIFMKDDKSDLKQKLNEFGTYVSFVPANRAYKFEFDKKNIELQDFSICPTDSTQNFTNTGFSTQSVKNEVINKFDDADDFMDVHDDGDQIEITVERLEEKDDAKEVSIMSKAKKIGIRYQCYCELFFSSKEEYKIHLRENKCKSIKVINIGKNRDKLVRNRLYCQICDLHLDTSYAYKVHRLMHKDENTNVNNCSELYQCSFCLRKFKIKNHLAAHIQKHEESDNIKHVCEICKREFKYKAYLENHVSTAHSRTNGFTCDVCVQSFIDKDSLEQHKKIHENDKKHRCTVCNKGFYMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCETCEKKFVSKGELDAHVRKHSGAHPFICDDCGNGFTTSSALVKHRRTHTGERPYVCDLCPMRFAASGTLKNHRRTHTGEKPYQCSYCEKAFVQRNDLVSHIRCHTGERPYICTQCGQSFRKASGLKTHVKMHIKDPIVGVNALLTSMHCSKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -