Lsal022414.2
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411809.1:20588038-20597344[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.005 0.47 11.8 1.0 3 23 721 742 720 742 0.96 2 22 0.35 33 5.9 0.3 1 22 1120 1141 1120 1141 0.95 3 22 7.7 7.2e+02 1.7 0.4 1 22 1183 1204 1183 1206 0.82 4 22 0.0034 0.32 12.3 1.1 3 22 1217 1236 1215 1236 0.94 5 22 0.0062 0.58 11.5 0.1 3 23 1286 1307 1284 1307 0.96 6 22 0.0016 0.15 13.3 1.8 1 23 1313 1336 1313 1336 0.95 7 22 0.13 12 7.3 0.0 1 23 1362 1385 1362 1385 0.90 8 22 0.0057 0.53 11.6 3.5 1 23 1390 1412 1390 1412 0.97 9 22 0.051 4.8 8.6 0.8 1 23 1418 1441 1418 1441 0.95 10 22 0.0024 0.22 12.8 1.3 1 23 1453 1475 1453 1475 0.97 11 22 0.00018 0.017 16.3 1.8 1 23 1529 1552 1529 1552 0.97 12 22 0.01 0.96 10.8 1.2 1 23 1612 1635 1612 1635 0.96 13 22 0.0024 0.23 12.7 2.1 2 23 1662 1684 1661 1684 0.95 14 22 0.041 3.8 8.9 0.1 2 23 1690 1712 1689 1712 0.94 15 22 0.01 0.95 10.8 0.2 1 21 1756 1776 1756 1777 0.95 16 22 0.00043 0.04 15.1 1.0 1 23 1787 1809 1787 1809 0.93 17 22 9.1e-05 0.0085 17.2 0.3 2 23 1903 1925 1903 1925 0.93 18 22 4.1e-07 3.8e-05 24.6 1.4 3 23 1932 1952 1931 1952 0.98 19 22 0.05 4.7 8.6 1.5 1 23 1970 1992 1970 1993 0.95 20 22 0.12 12 7.4 0.0 1 23 2016 2038 2016 2038 0.97 21 22 0.028 2.7 9.4 0.6 1 23 2044 2067 2044 2067 0.95 22 22 0.00032 0.03 15.5 0.7 1 23 2075 2098 2075 2098 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCTGAACCTCCCGTCCTCGCTTCGAAAATAAAGGATTGTGTGTCTGTACAGATAAACGAAAATGATGAGCTGCCTACCAATGTCTGCAAGAAATGTATGGACAATGTCAATAATTGGCATATATTTAAAAATGTATGTGAAAGGACTCAAAACAAACTACAGTCTCTGATTGGCAAAGATGGCAGCCAACTAGAAGAGGTGCAGATTAAGAGTGAACCTTTGTCTGATGATGTCTATGATGATGGGGTGGTCATTGATGGCTCTTATCCTGACAGTGAGAATGTCAATGTGGCAAACAAAGTTCAGCCTGAAGGTCCTCCAATTCTGGCATCATTGGGACTCACACCTAGGAGTGATAAGAAATGTATAGATCCTCGAACGGATTGGCATCGGGTTCATGCAATATTGGACATGGTTCATGAAGATGATGTGATAGATTCTCTGCAATCAAAAGAAGAATGTGATGTATTGCATCATTCTGACCACAATTCTGATTCGGAGATAGAACTCCAACTAGATATTAAGGATGAATATGTAGATTGCAAAAATGGCTATATCTGTAAAAATGATAGAATCTTGTCCAAGCAACCGAAATTGTCCCCATCTATTAATAATATTAAAATCAAAGAAATTAATCAACTTAGAAAACGTAAATCAGATTTTGCTAGGCAACATTGCCGGAGACCCAAGAATGCTTGGCAAATGTTATTCTCTGATGATCTATTAGATTTGATTGTCACTTCTACTAATGACAATATTTTAGGAAATGGCAACACTAACTCAGTTGTAACCAATGTCAGAGAAATTAAAACACTTATTGGCATTTTATATTTGCATGGTATAATGCGACCAACGCATGAGAAATGCAGTGACCTTTGGAATCGCGAATGTGGTGTACCTTGCATTAGCAATTCGATGAAATACGAAAGGTTCAGATACCTTCTTCAACACATTAGTTTTGATAAAGAAGACGGTGACAGCATTATACAGTTAGATATTATGAAACGTATGCGTAAGGTATTCGAAATTTTCGCCATGAATTGTAGAACAGCTCATGTAGTTGAGAATACTGTGGTTATTGATGAGATCATTGTGCCAGTTTATGGGCCTTGCCCATTTCGTTATTGCATTGAAAAGAAACCACTGAAATCTGGCATAAAAATGGTGTTGCTTGTAGATTCCTCCACTTTCTATGTAAGCAACGTGGACGTTATAACTGACCCCTATTTTAGTGCCGAAGAAATTACCAAGAAGTTAGTCTCACACTTGGCCGGCACTGGTAGAACAATTGTTATGGATAGTTGGTACACATCTTCTTCATTAATGGAATGCCTTAAAAAAGACTATCAGTTATTTTCTATAGCAGCTTTGAATCCCAACAATGACTGGATACCACCTTTGTTTCTTTCACAGTATAGAAAATCTAGGACATTCATATCTGGATTTGTTGATGAAGAGATTTCTTTGACATCTTATGTAAATTCAGAATCAAAATCTATTAATGTAATAACAAATGAGCCTAGATATTACAGAAGAGGTCATATGAACCAAACAACTGTTGTGTCTGTTTACAAAAAGAATCAATCTGCTGTTGAAGTTATCGACGTTCTTATGAATTATTACACTACTATGCAGCATACAAATGATTGGACAATGTCTTTATTCTTTACATTGTTGAACATTGCAACTGTTAATGCTCAGGTGTTGTGGAGTTCACAACACAAGACCGTAGCACAACGACGGTTGTTTATTAAAGAATTGGCTTTGAGTTTATTGGCACCCGAAACAGAATCACCAGGGATAAAAACTTGTGATATTAGTATCAGAAGAGAGGACTTGTCTATGTTCAGTGAATTGGCACAGCCATCATACAAGAACCGACGTCGATGCAGGATATGTGGAGTGGAGAGTGAGAAAGATGAAGAAGAGGAAGAAGACGAAGATTCCAATGAACCCCTACAATCTTTAGCGAAAGTTCCTCATATGCCAGAAGTCTCTATAACAGTGATGCGTCCAACGGGAGAAGCTCTGCATGCCCGACAAGGTATTCATCAACTTGCATCTAAAGATTGCCTTGTCTGTGGTCGGTCTTATAGATACTCTCACAATGCTCGCCGTCACGAGCTTACTGCACATAGCTTTGATAGGTACACAAACAAGATAACCCCCAAAAAGCCATATCCACATCTCCAGCCGAAGCTAAGACCGAATCCGTTCAATCCAAAAGCACGGTTGATGCCGAATCCTATTAGTCATAAGATGCAATTAATGACTAAAAATATCCCAACGAAAGTGGTACCGTTTAATAAAGTTATTACACCTCAAAAACCGATACCCATAAAATCAGCGAAGCCGCCACAAAATAATTTACCTTATCCTCTTCGCATAAAAGCTCTCAAAGATTTACAAATAAAGAAAAAGGAACCCCAAATTCTAAAGTCCTTGTTGACTTCAAAACCTGAAGTTCTGGTCTCTGAGCCAGAGATAATTAATTCTGGACCAGAAAGTCCAGAGACATTGATATCAGAACCCGAAATTGCCTCTTTTCAAGTAGAAACAGTTTTTTCGGAGCCTGATGTAGATGGTTTTGACCAAAGTCAGGGCGACGAAGAAGTTGATGGAGAAATACAAAATAATCAAAGTCAAAATTACGATAGAGTTGATATTAATTCTGAAAATGAGATTGAGATTGCTCGACAACAAAGTAATTTTAATGAGGGTGAAGAACAGGTAGACGGGGATGAAAATATAGATCAAGACTATGATAACATGGACGGTGGTCAGAGTGATAATGACCAAGAGGCTGTTGACGAAGAAAGTCAAGAAAATATGGAGAATGAAGAAGTACCTGAAATAAAGAAGGAGAATGAGATAAAAGAAAACAACGAAGGCCAGAATGATAGGGAAAATGAAGACGTTGAAATGAATCACGATGGAAATGATGAAGAAGATGATGAACTGCCAATATCGTTACAACCTGTTGTTGAAATAAACGAAGAAGTCAATCCATTTAATAGCACAATGCCTGAAGAAGACGAAGAACTTCAGGAGACCGCTGACCCTAATGAGACTGTTGATGAGGAAGAGCCCAAAGAGCTTGACCCTGATAAAATATACGTCACAAAAACTCAACGAGACTTTATATTAAAGTATCGTGACGTAATCGAGCAAATCAATACGAAACGTTGTTTATGCTGCGATAGAGAACATCCACGAAGAAAGGCTGTTATACAACACTTACAGAAAAATGGTCACAAGGTTCCAAAACATACGTGCTACAATTGTGTAGTCACATTTGGACATATTGGAGCACTTCTCAGTCATATGAGGTCGAACTCTTGCACTAATTTGTGGAAAATTATATACAACGAAGATGGTATCACTGATGATATGGTTCTAGAAGATGAACCCAAAGAGGTTAAAGTTCAATATAAAGATATTTTCAATGCCAGGTCATATGCGTGTAAACTCTGTCCAGCTAAATTCCAATTGAAACAATTTATTATGAAACATGTTTTAGATACCCATGAAGATGGCCAATCTAGAGTTCCTCTGGCCTGTGTTCATTGCCGTGCGAGGTTCAAAGAAAAGAGTTTGCTTAAGAAGCATATTCGTAAAGGTGATTGTACAGTCTATGTAGCTTGTGACTTATGTCCTGAAACATTCTTAAATATGCAAGATTTTAATGACCACGCATTGGCACTTCATGCTGGTAGTTTCGAGTCAGATACTCAGAGCAAATGTGTTGATGGTCGCCCTACGGACTGTCCTATATGCGGAAAGAAGAATAGCAGTTATCCCAATTTAGTGAAACATTTGAAGATTATACACAACGATGAAACACCGCATTATTGTCAGCATTGTGAAGCTAAATTCGAACAAGCTGCAGATCTTAACAAGCACATTTACATGGAACATTCTGACAGAACACTGGGTATGACACCCCAGGAGCCAGATATGTCTTTAGTGAAGGAAGAGGCGGAAGAGTATCATTATTCTTGCACTGAATGTAACGCTATATTTGAAACTGTTGATGCGTGGACTGACCACCAGGTAGCGGAACACAATCAAGTAGCGCATCACTGTGATCAATGCGATAAGAAATTTTTACGTCCTTCTGAGCTGGCAGAGCATAAGAATACACATTTGAGGGTTAAATTTTATCCATGCAATATTTGTGCCAATTCTTATAGTACTCCTCAAAAGCTGTCTGAACACGTGCAGCAATGTCATGCGGGTGCTGGCTCAATGGCTGGTGACACAGAATTCTTCTGCGATATCTGTATCAGGTCATTCAAAAGTCGCCAAGCATATTCTAACCATATGCGTATACATTCTAAGGTACCTACAACTAATAGAAAACCTGGGGATACCTTTAACAAAGGATTTTCTCCCTCTATTATAGGAAAGCCAATTAAGCAAATAGTTCCAATTGTTCAACCTGGTTTCGTCTCATTTAAACCTACTCCTAATTACAATATTCCCAATGCTCCATATTCATGTGATATATGTGGCAAAGGATTTATGCATAAGAAGAATATTTGGAAACACAAGAAAGTTTTGCATGCCGATATATTGAATGAAAGGAATGATAGTGAGGAGAATACTATGCAAGCTTCCACAGAAGAAGAAGAATACAATCTAGATGAAAACGGCACAATGCTTTCCACGCCACAATTTAACAGCTTCAACTTTACTAATTTTACCAACAATGTCCAGCAAACGCAGCAAGATCCAATGCCGTATTCGTGTGAATTATGCTTGAAAAAATTCCCTCTTAGAACTAGTTTATGGAAACATAAACGTGCTAAACACGGTATTGTTAATCCTAACTCTAACGATACGCAATCTCCATCGGCAAGTGGCGAAGGTGGTGGCGGCAGTAGTAGGTCTAGTTGTACAATTTGCAGGATTACATTTTCGGATAAGAAATCGTACTATCGTCATCGTAAAAATGTTCATAAGTCCACAGTCCAGATGTGCAAAATATGCGGAAAGCCACTTAGTTCTACACTGGAACTTTATGAGCATCTAAAAGCTGCTCATGCTAGAGAGTTGTTAGGCTACAATGCTAACCAAGGTTCCAGTAAATCTCAGGAAATTGTACCAGAAATAGAACCTGATTACGATAACGATCAAGAAGCTGTGGACCCTAGTGTTGATTATCAAGCGCGTTATCCATGCGATACTTGCGGCAAACAGTTTGTCGGCTTGTTGGCCTTGCAAAATCACCAGTGCATTAATCAGGGACCATCGCAACCTCAAACTTTCGATTGTGAGATTTGTCACAAAAGTTACACCTCAATATCAGCGCTTAAGAGCCATCGGGGCTGGCACTTACGTTCGCCAGATGGCAAAGCCGCTGCCAACAACAGCGGGCTATGGATGCCTCAGCACAAAGTTACAAGCAAGATAAGTAAGCATGAAGTACTCGATCCGTCTCAACTTGCTAAAGTTACCCACATAAGTCCTGCTGCCCCTGTTAATAGTACCATAGCAGCTAAAAGAAGATTGCCACCAGAGGTTGAGGTCACGGTGGTAAATCCAAATAAAAAAATGCGTTCCGATGATTCAGTTGAATTAGATCAACAAAATTCTGGTTCAACTGAAGATAGATACTGTAACATTTGCGATAAGGAGTTTACTAAACGTGCGGCTTATCAGCGTCACATGGACGAAGTTCATCAACCGAACTCTGTATTTTGTCCGGTGTGCGATAAGAGTTTCACAAGAAAATCTACTTTACTTATTCATATGAAGAAACATTACGAAAGTGGTGAGGGCAGTTCATCTGCACTCGGTCAAGAAGAGGAGACGCACACGTGCGATTTATGCGGAGCTCAGTATGATGATGAACAGGCGCTTCGTTCTCACAAAATAAGGCATCACGGAGAAGAATCTGAGGAAGAAGACGATGATGACGACGGACACGTGCCCATTCCTCCTCCGGGTGAGTTTACCTGCGGTCAATGTGGAGACGGTGTGGCGACACCTAGAGACTTAATCGCCCATCGCACAATGCACGCTACTCCTACAAAGTTCTTCTGTAATATATGTAAAGTATACTTTGCGAGAGCATTGGACCTTTCGTCCCACACGAGGGCCAGACACGCGGACAACGACAAGGTATTCTTCCCTTGTGCAATGTGCGACAGGTTTTACATGAATAAGAAAAGTTTACAGAGACACATTGAAATGTCCCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLASKIKDCVSVQINENDELPTNVCKKCMDNVNNWHIFKNVCERTQNKLQSLIGKDGSQLEEVQIKSEPLSDDVYDDGVVIDGSYPDSENVNVANKVQPEGPPILASLGLTPRSDKKCIDPRTDWHRVHAILDMVHEDDVIDSLQSKEECDVLHHSDHNSDSEIELQLDIKDEYVDCKNGYICKNDRILSKQPKLSPSINNIKIKEINQLRKRKSDFARQHCRRPKNAWQMLFSDDLLDLIVTSTNDNILGNGNTNSVVTNVREIKTLIGILYLHGIMRPTHEKCSDLWNRECGVPCISNSMKYERFRYLLQHISFDKEDGDSIIQLDIMKRMRKVFEIFAMNCRTAHVVENTVVIDEIIVPVYGPCPFRYCIEKKPLKSGIKMVLLVDSSTFYVSNVDVITDPYFSAEEITKKLVSHLAGTGRTIVMDSWYTSSSLMECLKKDYQLFSIAALNPNNDWIPPLFLSQYRKSRTFISGFVDEEISLTSYVNSESKSINVITNEPRYYRRGHMNQTTVVSVYKKNQSAVEVIDVLMNYYTTMQHTNDWTMSLFFTLLNIATVNAQVLWSSQHKTVAQRRLFIKELALSLLAPETESPGIKTCDISIRREDLSMFSELAQPSYKNRRRCRICGVESEKDEEEEEDEDSNEPLQSLAKVPHMPEVSITVMRPTGEALHARQGIHQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKPYPHLQPKLRPNPFNPKARLMPNPISHKMQLMTKNIPTKVVPFNKVITPQKPIPIKSAKPPQNNLPYPLRIKALKDLQIKKKEPQILKSLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETVFSEPDVDGFDQSQGDEEVDGEIQNNQSQNYDRVDINSENEIEIARQQSNFNEGEEQVDGDENIDQDYDNMDGGQSDNDQEAVDEESQENMENEEVPEIKKENEIKENNEGQNDRENEDVEMNHDGNDEEDDELPISLQPVVEINEEVNPFNSTMPEEDEELQETADPNETVDEEEPKELDPDKIYVTKTQRDFILKYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNEDGITDDMVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLACVHCRARFKEKSLLKKHIRKGDCTVYVACDLCPETFLNMQDFNDHALALHAGSFESDTQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNDETPHYCQHCEAKFEQAADLNKHIYMEHSDRTLGMTPQEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICANSYSTPQKLSEHVQQCHAGAGSMAGDTEFFCDICIRSFKSRQAYSNHMRIHSKVPTTNRKPGDTFNKGFSPSIIGKPIKQIVPIVQPGFVSFKPTPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEEEYNLDENGTMLSTPQFNSFNFTNFTNNVQQTQQDPMPYSCELCLKKFPLRTSLWKHKRAKHGIVNPNSNDTQSPSASGEGGGGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQEIVPEIEPDYDNDQEAVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQGPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVLDPSQLAKVTHISPAAPVNSTIAAKRRLPPEVEVTVVNPNKKMRSDDSVELDQQNSGSTEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSALGQEEETHTCDLCGAQYDDEQALRSHKIRHHGEESEEEDDDDDGHVPIPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -