Lsal028238.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- Zfy1
- Assembly
- GCA_948253155.1
- Location
- OX411821.1:921045-926656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.96 90 4.6 1.4 1 23 168 193 168 193 0.93 2 17 0.011 1.1 10.6 0.6 3 23 242 262 240 262 0.96 3 17 0.74 69 4.9 0.0 6 23 274 292 274 292 0.94 4 17 0.0037 0.34 12.2 1.6 2 23 303 325 302 325 0.95 5 17 4.3e-07 4e-05 24.5 0.7 2 23 348 369 348 369 0.97 6 17 9.5e-05 0.0089 17.2 0.8 1 21 376 396 376 397 0.96 7 17 0.099 9.3 7.7 3.2 1 23 506 528 506 528 0.96 8 17 0.00039 0.036 15.2 2.5 2 23 535 557 534 557 0.92 9 17 5.1e-07 4.8e-05 24.3 0.8 1 23 563 585 563 585 0.99 10 17 8.8e-07 8.2e-05 23.6 2.5 1 23 591 613 591 613 0.97 11 17 0.0016 0.15 13.3 1.0 1 23 619 641 619 641 0.97 12 17 0.59 56 5.2 0.4 3 23 684 703 684 703 0.96 13 17 3.1e-07 2.9e-05 25.0 0.5 1 23 709 732 709 732 0.98 14 17 1.8e-05 0.0017 19.4 3.1 1 23 738 760 738 760 0.98 15 17 1.3e-05 0.0012 19.9 0.1 1 23 766 788 766 788 0.99 16 17 5.9e-06 0.00055 21.0 0.6 2 23 794 815 793 815 0.96 17 17 0.00015 0.014 16.5 1.0 6 23 825 842 824 842 0.99
Sequence Information
- Coding Sequence
- ATGAATGAAACTCAACAAATATATATAGTAAATCCTAGCATGAGCCTACCATCAACATCAAAGTCTATTGATATGCCGGGAACTACACAAGTTAACCTTGACAATGTACAAGACTTTTCAAATGTGTGTCGAACATGTGCAACTATCACAGAGTTCGTCATCCCCATATTCGCTGGGGAGGGTTTGCAGAATAACTTGGCTGATAAAATACATAAACACTTACCTATAAAGGTGGCGGAGTCAGATATACTTCCTCGAGTGGTGTGCTATCAGTGTGCGAGCACTCTGTTAGCGTGGCACGAGCTCGTCACGTGTTGCCACCACGCCGACCTCGCGCTGAGGGCCCGCCTTGCTGCTGATAACGCCACTGGTGAAAAGGATTCAAAGCCAAACTTGACTCTAGAGGATGACATAGAAAGCAAGTTGCTTTACATCAACGTCCAAAATATTCTGGTAGATTACTTCCTCGACTTGGACATAAAAGATATCCTAGATGTGGAGTATGTCTGTCAAAAGTGCACCAATAAACCTGTGTTTACCACCGTAGAGAGTTTAAGTAACCATTTAAAACATGACCACTGGTCAGATGCAAAAGATGCGGAAAGCACCAAAAAGTTCATCAAAAATTATATAACGTTTGAAGAAGTTTTAATCTCAGAGGATTCCGATAGAGACGACCAATCCCGAAGTCGTAATACAGAGACGGCATTACCAAATTTATTTTGTCCATTTTGTACCAGTGCGTTTAGTTCATCAACAAGATTGGTGTGGCATCTCAACAAACACTTCGAAGTTAGCATTGAGGATGGTGTCGTCTGCTGTGATATTGCTTATACCGATAAGAAAGGCTTCGTCAAACACTTACAAGACGCTCATGTTAACAGATCTATAGAAGACACATTGAAAGTGTGTAAAAGTTGTGGTTTTACTACAGAACATTCTAGCGAACTGCAATCTCATATAGATAAAATGCATCAGAAAAAAAAACGGGACAGAGGAAAGAAATTGCAAAGTCCAAAAAACCAAAAGTATATACCGGCGGTGTGTCCAGAATGCAATAAGACATTCTCTAACAAATACGCCATGTTCGTCCATATGAAGACACACAGCGGTGAGGTAGACTCGTATTCTTGTGACAAATGTAATAAGATATATAAAAATCGTCAAAGTTTAAACTCTCACATTAAGGACGGCTCACAAGCACTTGACGAATCAGACGAGTCATCAGATCAATCAGATAATAAGCCACTCTCCACTATAGCAAGCAGAAAGTCCTTAGACACATATAATGATTTCTATAATGCTTTAGTCAATTTTAGAAATCATTTTGTGGGTGAACATAAATCTGAAGAGTCATACCCTGATTTTACTGACTCGGGTGCATCAGAAGTTGAAGAGAATAACATGAACAGTTTTGATGACTTAACACAATTTAATATGAGGAAGGATAGGATGGATGAACAGACGAGACTAGAACTTAGCCAGGCTGAGACTAAGATCAATGGGAAATTATTTTATACGTGTAGGATATGTGGCAAAAACTTAAGTTCATCTCATACTTACGTGTTCCACAAAAGAATACACACGGGAGAGAGGCCTTGTATCTGCCATATATGTGGTAAGCAGTTCAGAGCACCAAATGGACTCCAAAGACACCTTACTCAAACACACGAACGCATATTCAGATATACTTGCAGTCTTTGTCCTAAAAATTTCGCGAATTCACAGAATTTAAAGCAGCATCTACGGATACATACAGGCGAACGACCATTTGCGTGTACGCATTGTGGTAAAAGATTCACTCAAAGCGGGTCCTTATACGTGCACCTCAAAACACATAGTGAACAGTTTCCCTATCACTGCGCGGAATGCGGGGCTAAGTTCCGTTTAAGATCTGGCCTCGTAAGACACAGCCTTAAGCACACCGGAGAAAGACCACATGTGTTGTATGCGGAGATCAAGATCGAAGAGAAAGATATGGATCCTTCAAAAATCGAAAACAAACCAAAAGTGTTGAGCAGAAACGATGATACCCAACGAACATCGTGGTGTGATCTTTGCAATAAAAGTGTTTCCGTAGTGTATTGGCGAAGACATTTACGGCTACATAGTGGTGAAAGGCGGTATAGCTGTCACACTTGTGGGCGCGCCTTCGCTGACAGTGGCAATTTGGCTCGACATGTAAAAACGTTGCACGCTCAACTGAAGCCATTTTCGTGTCCTATTTGCTTCAAAACATTTTCCAGAAGAACTCATTTGGATGACCATGTTAAGTCACATTCAGAGGTGCGGGCGTATGTTTGTGATGTCTGTGGAAAGGCATCCAAGTCTAGTGCAGCATTACGCATGCATGCACGCACGCACGATGCGCGAACATTATCGTGCATGGGTTGTGGTGCATGTTTCAAAAGAAAGGCGGAACTTCGTGCGCACATGAGTGTGCACACGGGGGAGAGAGCTCACGCTTGCGCGTGCGGGAAGACGTTCAGACTGCGCAGTCAACTTACCTCGCATACGCGGACCCATCTAAACAAAGAGTCGTTAATATAA
- Protein Sequence
- MNETQQIYIVNPSMSLPSTSKSIDMPGTTQVNLDNVQDFSNVCRTCATITEFVIPIFAGEGLQNNLADKIHKHLPIKVAESDILPRVVCYQCASTLLAWHELVTCCHHADLALRARLAADNATGEKDSKPNLTLEDDIESKLLYINVQNILVDYFLDLDIKDILDVEYVCQKCTNKPVFTTVESLSNHLKHDHWSDAKDAESTKKFIKNYITFEEVLISEDSDRDDQSRSRNTETALPNLFCPFCTSAFSSSTRLVWHLNKHFEVSIEDGVVCCDIAYTDKKGFVKHLQDAHVNRSIEDTLKVCKSCGFTTEHSSELQSHIDKMHQKKKRDRGKKLQSPKNQKYIPAVCPECNKTFSNKYAMFVHMKTHSGEVDSYSCDKCNKIYKNRQSLNSHIKDGSQALDESDESSDQSDNKPLSTIASRKSLDTYNDFYNALVNFRNHFVGEHKSEESYPDFTDSGASEVEENNMNSFDDLTQFNMRKDRMDEQTRLELSQAETKINGKLFYTCRICGKNLSSSHTYVFHKRIHTGERPCICHICGKQFRAPNGLQRHLTQTHERIFRYTCSLCPKNFANSQNLKQHLRIHTGERPFACTHCGKRFTQSGSLYVHLKTHSEQFPYHCAECGAKFRLRSGLVRHSLKHTGERPHVLYAEIKIEEKDMDPSKIENKPKVLSRNDDTQRTSWCDLCNKSVSVVYWRRHLRLHSGERRYSCHTCGRAFADSGNLARHVKTLHAQLKPFSCPICFKTFSRRTHLDDHVKSHSEVRAYVCDVCGKASKSSAALRMHARTHDARTLSCMGCGACFKRKAELRAHMSVHTGERAHACACGKTFRLRSQLTSHTRTHLNKESLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -