Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411812.1:18665191-18699857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.5e-05 0.0024 19.0 2.2 1 23 425 447 425 447 0.97

2 18 0.0063 0.59 11.4 0.4 1 20 453 472 453 475 0.93

3 18 1.9e-05 0.0018 19.3 5.6 1 23 494 516 494 516 0.98

4 18 0.00013 0.012 16.7 4.9 1 23 522 544 522 544 0.99

5 18 3.4e-05 0.0032 18.6 5.3 1 23 550 572 550 572 0.97

6 18 9.3e-05 0.0087 17.2 6.7 1 23 578 600 578 600 0.97

7 18 9.2e-05 0.0086 17.2 6.5 1 23 606 628 606 628 0.97

8 18 4.5e-07 4.2e-05 24.5 1.9 1 23 634 656 634 656 0.98

9 18 4.6e-05 0.0043 18.2 7.9 1 23 662 684 662 684 0.98

10 18 3.7e-05 0.0035 18.4 6.8 1 23 690 712 690 712 0.98

11 18 1.8e-06 0.00017 22.6 4.2 1 23 718 740 718 740 0.98

12 18 2.6e-06 0.00025 22.1 6.1 1 23 746 768 746 768 0.97

13 18 6.6e-07 6.2e-05 23.9 5.2 1 23 774 796 774 796 0.98

14 18 2.8e-06 0.00026 22.0 6.0 1 23 802 824 802 824 0.98

15 18 1e-05 0.00094 20.2 7.6 1 23 830 852 830 852 0.97

16 18 9.3e-05 0.0087 17.2 6.5 1 23 858 880 858 880 0.96

17 18 0.002 0.19 13.0 0.6 1 23 887 909 887 909 0.95

18 18 0.017 1.6 10.1 5.2 1 23 921 943 921 943 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.5e-05	0.0024	19.0	2.2	1	23	425	447	425	447	0.97
2	18	0.0063	0.59	11.4	0.4	1	20	453	472	453	475	0.93
3	18	1.9e-05	0.0018	19.3	5.6	1	23	494	516	494	516	0.98
4	18	0.00013	0.012	16.7	4.9	1	23	522	544	522	544	0.99
5	18	3.4e-05	0.0032	18.6	5.3	1	23	550	572	550	572	0.97
6	18	9.3e-05	0.0087	17.2	6.7	1	23	578	600	578	600	0.97
7	18	9.2e-05	0.0086	17.2	6.5	1	23	606	628	606	628	0.97
8	18	4.5e-07	4.2e-05	24.5	1.9	1	23	634	656	634	656	0.98
9	18	4.6e-05	0.0043	18.2	7.9	1	23	662	684	662	684	0.98
10	18	3.7e-05	0.0035	18.4	6.8	1	23	690	712	690	712	0.98
11	18	1.8e-06	0.00017	22.6	4.2	1	23	718	740	718	740	0.98
12	18	2.6e-06	0.00025	22.1	6.1	1	23	746	768	746	768	0.97
13	18	6.6e-07	6.2e-05	23.9	5.2	1	23	774	796	774	796	0.98
14	18	2.8e-06	0.00026	22.0	6.0	1	23	802	824	802	824	0.98
15	18	1e-05	0.00094	20.2	7.6	1	23	830	852	830	852	0.97
16	18	9.3e-05	0.0087	17.2	6.5	1	23	858	880	858	880	0.96
17	18	0.002	0.19	13.0	0.6	1	23	887	909	887	909	0.95
18	18	0.017	1.6	10.1	5.2	1	23	921	943	921	943	0.99

Sequence Information

Coding Sequence: ATGAATCAGGAGCACCATAATATGAATGCGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCCCAGAACCAGAGAGTTCAAGCTGTTCAACAACAGCAACAGAATACCTTGCCTGCCACGACATCTGCCACTGATCTAAGAGTGAACTCTGTGAATTCCGCTGTAAACGTAGCTTTGTCCAGTGTCGCTAAATATTGGGTGTTTACTAACTTATTCCCCGGTCCGATACCACAAGTATCTGTATACGGATTACCGGCAAATGCTAGACTCGAAAACGGCAAACCAGTTCAGGATCTTGGGCAAACTCACAGTATATTAAATGGAGATCCAAATATCATACTTGGCCATCATACCGGACAATCTCAAGTCACAGTTTCTGCCCCTGGTGGACAGCAGATACCTGTGTCACAGATTATAGCTACTCAATCTGGACAAACTCATGAAGCTCTTGTGGCGCACAGTCAGCAAGCAGAACTCGCAGTAGCACAAGGTTCCAACAACAACCAACAGATCACAGTTAGCACTGGACAGCCAACCCATCAGCAAGTAACCAATCGTCGGATTGAGTATGTGCAACACCATAACATTGATATGGGACATCATTCACAGCAGCATATTATGCAGCAACAGCTCATGGCTGCAGCGCGGCCAGAACACTCCAACCAACAGATACAACTAACTGTGAGTGAAGATGGCATTGTAACGGTAGTGGAGCCCGCTGGAAATAAAATGGTCGAAAAAGAGGAACTACACGAGGCAATCAAAATGCCCACTGATCATGCGCTTACTGTACATCAGTTGCAGCAAATTGTTGGACAACAGGTGATAGATAGCGTTGTTCGCATAGAGCAAGCTACAGGTGAGCCTGCCAACATACTAGTGACACACAATCCAGATGGCACTACATCAATAGAAGCTAGTGCTGCTGAGACACTAATAGTTAAGGACGAGAAGAATACCTCCAAGATTGAAACCGCACAGTTCGCGATACCTGCGGACATAAAAGATATAAAGGGCATAGACTTAAAGAGTGTTGGTACTATGGGAATGGAAGGAGCGGTAGTGAAAATATCAGCCGGTGCGACTGAACATGATCTCCATGCGATGTACAAAGTAAATGTTGAAGATCTCTCACAGCTGCTTGCTTACCATGAAGTGTTTGGGAAATTAAATTCTGAAGGACAACAACAGCAAGCTAAGGTAATAAATGAGGTGGAAGTAGAAGCGGGCACAAGTACTGCAATGACAGAAGCTGAATCCTCGCCGGGACATCATTCATGTGATATTTGCGGGAAAGTGTTCCAATTCCGCTATCAACTCATTGTACATAGACGTTACCACGGTGAAAGCAAACCATTTGCGTGTCAAGTTTGTGGCTCTGCTTTCGCAAATCCTGCAGAATTATCAAGGCATGGAAAATGTCATCTTGCCGGTGACCCTAACGAGAGACATGCCAAAAGGATGGCCCAAGATAAGCCATATGCCTGCACCACTTGCCACAAAACCTTTTCCAGAAAGGAACATTTGGATAATCATGTACGAAGTCACACTGGGGAGACTCCATACAAGTGCCAGTTCTGCGCCAAAACCTTCACCCGTAAAGAACATATGGTAAACCACGTGCGTAAACACACGGGCGAGACGCCTCACAGATGCGACATTTGCAAAAAGAGTTTTACAAGAAAAGAGCACTTCATGAATCACGTCATGTGGCATACAGGAGAAACCCCGCATCGATGCGACTTCTGTTCTAAGACGTTTACGCGTAAAGAGCACTTACTGAACCATGTACGTCAGCACACCGGTGAATCTCCACATAGATGTAACTTCTGCAGCAAATCGTTTACGCGGCGCGAACATCTCGTCAACCACGTGCGACAACACACCGGAGAAACACCTTTTCAGTGTGGGTACTGCCCTAAAGCTTTCACCAGGAAGGATCACTTAGTAAACCACGTCCGCCAACATACAGGAGAATCGCCTCACAAGTGCTCCTTCTGCACCAAATCGTTCACACGTAAAGAGCACTTAACAAACCACGTCCGGCAACACACTGGCGAATCGCCTCATCGGTGTACTTTCTGCGCAAAGTCATTTACAAGAAAAGAACATCTTACTAATCATATCAGACAGCACACGGGTGAAACGCCACACAAGTGCACGTACTGCCCGCGCGCGTTCGCAAGGAAGGAGCACCTCAACAACCACATTCGTCAGCACACAGGCATCACGCCGCATTCGTGCTCCTACTGCAACAAGAGTTTCACCAGGAAAGAACACCTCGTCAATCACATACGGCAACACACGGGGGAGACTCCATTCAAATGTACTTACTGTACGAAATCATTCTCTCGAAAGGAGCATTTGACAAATCACATAAACCTTCACACTGGAGAGACGCCACACAAATGTCCCTTCTGTACTAAAACATTCTCTAGGAAGGAACACTTAACTAATCATGTCAGAATTCATACGGGTGAGTCGCCACATCGATGCGAATACTGTCAAAAGACATTCACGCGGAAGGAGCATCTAACGAATCATTTGAAACAGCACAATGGCGACACCGCGCATGCGTGTAAAGTGTGCGCCAAACATTTCACCAGGAAGGAGCACCTCGTCACGCATATGAGATCACACAGTTGTGGGGAACGCCCACACATATGCGGTGAATGCGGTAAATCATTCCCGTTAAAAGGAAACCTACTGTTTCACGAGCGCTCACACAACAAGGCTAACGCCAACAATGCCAACAGGCCTTATAGATGTGACGTCTGTTCCAAGGAGTTCATGTGTAAAGGACATTTGGTGTCGCACCGGCGTACACACAACGAGGGTGCTGAAGCCACTCCCAGTACTGAAACTCCAACTGAAACAGAAGACTGCAATGATTGCAATAAATGTATTAAAGCCGACCCTGAGCGAGCTGAAAGAAAACAAGAAATCAGAACTTCGGTGGAAGCCAGGCCAGTAGAAAATAATGTTGTGCAACCTCAACAAAACACTGCCACTACTGTGATGCAAATAAACAATCAGCAAGTTCGCAGTGGGTCTACAAGTGTGTCAGGTGTGACGTCGGGCACGTTCACCCACACGGTGAGCGCGCAACACCACGCTGGCGCCGCGATCGCTCACCACCCGGTCACTGTCAACTACTAG
Protein Sequence: MNQEHHNMNAGGGQPPGSSESQNQRVQAVQQQQQNTLPATTSATDLRVNSVNSAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPANARLENGKPVQDLGQTHSILNGDPNIILGHHTGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQAELAVAQGSNNNQQITVSTGQPTHQQVTNRRIEYVQHHNIDMGHHSQQHIMQQQLMAAARPEHSNQQIQLTVSEDGIVTVVEPAGNKMVEKEELHEAIKMPTDHALTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAAETLIVKDEKNTSKIETAQFAIPADIKDIKGIDLKSVGTMGMEGAVVKISAGATEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVINEVEVEAGTSTAMTEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPFACQVCGSAFANPAELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYKCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGITPHSCSYCNKSFTRKEHLVNHIRQHTGETPFKCTYCTKSFSRKEHLTNHINLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEYCQKTFTRKEHLTNHLKQHNGDTAHACKVCAKHFTRKEHLVTHMRSHSCGERPHICGECGKSFPLKGNLLFHERSHNKANANNANRPYRCDVCSKEFMCKGHLVSHRRTHNEGAEATPSTETPTETEDCNDCNKCIKADPERAERKQEIRTSVEARPVENNVVQPQQNTATTVMQINNQQVRSGSTSVSGVTSGTFTHTVSAQHHAGAAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: -
80% Identity: -