Lsal016373.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucoma salicis
Gene Symbol
PRDM7
Assembly
GCA_948253155.1
Location
OX411826.1:13458250-13479047[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 6.7e-05 0.0063 17.6 1.5 1 23 393 415 393 415 0.99
2 17 3.3e-06 0.00031 21.8 4.2 3 23 422 442 421 443 0.95
3 17 0.018 1.7 10.0 0.1 5 21 481 497 480 498 0.91
4 17 1.4e-06 0.00013 22.9 5.7 1 23 505 527 505 527 0.99
5 17 5.3e-05 0.0049 18.0 0.9 1 23 533 555 533 555 0.99
6 17 1.1e-05 0.00098 20.2 9.0 1 23 561 583 561 583 0.97
7 17 9.9e-07 9.3e-05 23.4 0.5 1 23 617 639 617 639 0.99
8 17 4.5e-06 0.00042 21.3 0.8 1 23 645 667 645 667 0.99
9 17 3e-05 0.0028 18.8 0.2 1 23 673 695 673 695 0.98
10 17 3e-05 0.0028 18.8 0.2 1 23 701 723 701 723 0.98
11 17 5.7e-05 0.0053 17.9 0.8 1 23 729 751 729 751 0.98
12 17 5.9e-06 0.00056 21.0 1.1 1 23 757 779 757 779 0.99
13 17 2.1e-05 0.002 19.2 0.4 1 23 785 807 785 807 0.98
14 17 6.3e-06 0.00059 20.9 0.7 1 23 813 835 813 835 0.99
15 17 4e-06 0.00037 21.5 1.4 1 23 841 863 841 863 0.99
16 17 1.7e-05 0.0016 19.5 1.4 1 23 869 891 869 891 0.99
17 17 0.017 1.6 10.1 2.3 1 14 897 910 897 912 0.86

Sequence Information

Coding Sequence
ATGCCAAGAGGTATAGAAAGAAGCATGTTAGGCGTAAAAATAAAAGACAAAGTACGAAACTCTACCATACGAAAGAAAATCACTGTGATAGATGCCTTAGAACACGCACAAAAGCAAAAATGGAAGTGGGCAGGTCACGTAGCTCGCATGAAAAATTTAAAATGGACAGAATCTGCCACCTTCTGGAAAGACCCACAAAGTAAACGTAAGAGAGGGAGACCGCCAGAACGTTGGGTAGATGAAATCAAGAAAACCGCAGGAGATGAGTGGAGACAAGAGGCACAAGATAGCATAAAATATTCTGTAGAGATGTCGCCGCGTATCGTCAGCCGAGTGTTACGTCAGAAGCCTCGGGTCAACTATTACGAGCCTGAAGAGCCAAGCTTTGACGAATATGTATTCTGCGAGAAGTGCTCGGACTACGTGTTCGAGTATTGCGCCATACACGGACCTCTGCTCGTCATCCCTGATGATAAAGTATCCTACAAGACCGCCGTCCCAGACATAGTGCCGCGCGCCGCACTCACGGTCCCGCGAGTATTCCTGCACCTCGCACGATCTCTCATACCAGGTGCGGGCATAGGCGTGTTCAGCACGCTGACGCTCCCGCGCGGTGTACGCTTCGGTCCGTACCGCGGCCGACGCTGTCACGACGTTCGCTCAGACTACTGCTGGCAGATATACGATCGGAACCACAAACCTTCACACGTAGTGGACGCTGCAGACGCTTTTCACTCCAACTGGATGCGCTACGTGAATTGCGCGCGACACTGGTCTGAACAGAACCTCGTCGCGTATCAGTACAAGGGACAGCTCTTCTACAGAACGATCAAAGTAATACCTCGTTTCACGGAACTGCTAGTCTTCTACGGCGCCACGTTTGCCAACATTTTGCACATCGACTTACGAGCTTACAACACACCTACAGAATATGCGCGCTATTTAGGCACTGTAATCAAGACACCAAAGATGCCGTTAGAGAAAGGAAGCGTTCAAATAACTATTTCACACAACCTTGAAACAGAGTTTATGCAAGATGAAAATCTTGAAAAAATTCAGGCCATAGACAAACTTAAGAAAAGTAATGTTATGGATTTACCAGTAACACAAAAGTCATATAAAGAGAATGAAAAATTAGATAGCTTTAGGAAAGCAgcacattctgttgaaactccatataaatgtgatgtatgtcagaaatatcttagtaataggcgtaatctaataacacatacccgaatacacacaggtgagaaacctatgtgtgacatatgtggaaaatgcttctatagaaaaagagatttagtcagacacatacgattacatcatacgagtgagaacctctacaaatgtgatctaagtaagaaattattcagtgaaaagtgtaaattacttcaacataaccgtataaattcaggtgataagccaaataagtataatatatgtgagaaatattttactaaaaaagacgatttaattagacataaacaaatagactcggttgagaaaccttataagtgtaacatatgtgagaaatgcttttgtaaaaaaagtgatttaataagacatgtccggatacacacgggtgagaagccgtacaaatgtgacgtatgtactaaattattcagtgaaaagtataaattaatagcacatacccgtatacacactggtgagaagccgtatacatgtaacatatgtgataaatgttttaggcataagcatactttaaaaagacatatcagtttacacaccgatgaaaagccttgtaaatttaatatatgtgaccggtatattggttgtagagatgcgttaatagaacacacccggatacacaccggtgcgaagtcatataaatgtaacatatgtgatctgcgttttagtcgtaaagatggattaatagaacacacccggatacacacccgtgagaaaccatataaatgtaatatttgtgagctacgttttagtcgtaaatatggattaatagaacacacccggatacacaccggagagaaaccatatgaatgtgacatgtgtgagctacgtttcagtcgtaaaggtggattaatagaacacacccggatacacaccggtgagaaaccatatgaatgtgacatgtgtgagctacgtttcagtcgtaaaggtggattaatagaacacacccggatacacaccggagagaaaccatatgaatgtgacatgtgtgagttacgtttcagtcgtaaaggtagattaagagaacacacccggatacacaccggtgagaaaccatataaatgtaacacgtgtgagctacgttttagtcgtaaaggtggattaataaaacacacccggatacataccggtgagaaaccatatgaatgtgacatgtgtaagctacgttttagtcgtaaaggtggattaatagaacacacccggatacacaccggtgagaaaccatatgaatgtgaaatgtgtaagctacgttttagtcgtaaaggtggattaataaaacacactcggatacacaccggtgagaaaccatataaatgtaacacgtgtgagcggcgttttactcgtaaaaatgctttaatagtacacacccgaatacacaccggtgagaaaccatataaatgtaacacgtgtgagctgcgctttactcgtaaatatggattaatagaacacactcgtatacacacaggtgataacccatataaatgtaacatatgtgacaaatgtttctatcGTTATATAGAACTCGGTGGAAGAAGGGGTAAATGGAATGACATACGCAAAGTGGAAGAAAAAAATTCAAATCTACTCCATTTAAGCAAAATAACAAAGACACATGTGTTCCCTAAATATAAAACTAAAATGCGGGTTAAGGACGCCGCACAGGTATTAAGCATTACGGTAGCTGCCGTTTTAAAACTTATGTCTGAAGGAGAGACCAACGCAGAGCGAGCTAAAGAATTGAGGGACACGGCTTTAGTTGTTGAAGACCTCGATCGCCTCTTTGATTATACAAACGGACCTTCAGGACCTGATGATATAAAAAAGGCCGCTGACAAAATTCTGAGGCTAACGGACTTCAAAGACATAGTTTTTGGCAAAAATACGGACAAGAAGATAGATGCAAATAAAGAAAATATAGCAGAGATGAATGTTACTACTGAAACAGATGATATTCCAGTACTCAGCTGGCCTGATGAATACATAGATTTTGAAAAGGAATTGACGGAAATTGACCAACAGCCCTTAGTCTATGTCAGCGGCTATGTGGCCAGTAATTTTAAAAAGCACGAATGCCTGGAATGTAAAAGATTTCCTGAAGATCGGAGAGGCAAACTATAA
Protein Sequence
MPRGIERSMLGVKIKDKVRNSTIRKKITVIDALEHAQKQKWKWAGHVARMKNLKWTESATFWKDPQSKRKRGRPPERWVDEIKKTAGDEWRQEAQDSIKYSVEMSPRIVSRVLRQKPRVNYYEPEEPSFDEYVFCEKCSDYVFEYCAIHGPLLVIPDDKVSYKTAVPDIVPRAALTVPRVFLHLARSLIPGAGIGVFSTLTLPRGVRFGPYRGRRCHDVRSDYCWQIYDRNHKPSHVVDAADAFHSNWMRYVNCARHWSEQNLVAYQYKGQLFYRTIKVIPRFTELLVFYGATFANILHIDLRAYNTPTEYARYLGTVIKTPKMPLEKGSVQITISHNLETEFMQDENLEKIQAIDKLKKSNVMDLPVTQKSYKENEKLDSFRKAAHSVETPYKCDVCQKYLSNRRNLITHTRIHTGEKPMCDICGKCFYRKRDLVRHIRLHHTSENLYKCDLSKKLFSEKCKLLQHNRINSGDKPNKYNICEKYFTKKDDLIRHKQIDSVEKPYKCNICEKCFCKKSDLIRHVRIHTGEKPYKCDVCTKLFSEKYKLIAHTRIHTGEKPYTCNICDKCFRHKHTLKRHISLHTDEKPCKFNICDRYIGCRDALIEHTRIHTGAKSYKCNICDLRFSRKDGLIEHTRIHTREKPYKCNICELRFSRKYGLIEHTRIHTGEKPYECDMCELRFSRKGGLIEHTRIHTGEKPYECDMCELRFSRKGGLIEHTRIHTGEKPYECDMCELRFSRKGRLREHTRIHTGEKPYKCNTCELRFSRKGGLIKHTRIHTGEKPYECDMCKLRFSRKGGLIEHTRIHTGEKPYECEMCKLRFSRKGGLIKHTRIHTGEKPYKCNTCERRFTRKNALIVHTRIHTGEKPYKCNTCELRFTRKYGLIEHTRIHTGDNPYKCNICDKCFYRYIELGGRRGKWNDIRKVEEKNSNLLHLSKITKTHVFPKYKTKMRVKDAAQVLSITVAAVLKLMSEGETNAERAKELRDTALVVEDLDRLFDYTNGPSGPDDIKKAADKILRLTDFKDIVFGKNTDKKIDANKENIAEMNVTTETDDIPVLSWPDEYIDFEKELTEIDQQPLVYVSGYVASNFKKHECLECKRFPEDRRGKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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