Lsal018056.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- clz9
- Assembly
- GCA_948253155.1
- Location
- OX411828.1:10320391-10321487[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-09 3.1e-06 27.5 0.1 2 36 11 45 10 49 0.91
Sequence Information
- Coding Sequence
- ATGGACAGAAAGAAACGCAAGTGTTATACTAATGCGAAAGTGGCTGAAGCACTTTCATCAATTCGACAAGTTATGAGTATTTACAAAGCCTCGAGACAATATAATGTACCAGAGACTACGTTACGGAGTAAACGAGATGAGCTTTACGAGAATGAACATTGTAGTAAGCAACCAGTACTTAACCTAAACGAAGAGAGACAAACCGTTGATTGGATCCATTACCTTGATGGCCATAGTTCACATATATCTCTGCCTTTAACAACTTTTTGCAAGGAAAAAGGGATCGTGCTAGTTGGTTTGCTCCCAAATTCAACGCACGTCTTGCAGCCTCTTGATGTCGCCGCTTTCAAGCCCGTTAAGGGGACTTGCAGAGATATTGTGAGGGAATTCAGGGTTAAACATAATTATGCGAAGCTTAAGCGCACAGACTTTTCTAGAGAAGTGCAAAATGTTTTGACAGAAGCCTCAAGCCTGAAACAATAA
- Protein Sequence
- MDRKKRKCYTNAKVAEALSSIRQVMSIYKASRQYNVPETTLRSKRDELYENEHCSKQPVLNLNEERQTVDWIHYLDGHSSHISLPLTTFCKEKGIVLVGLLPNSTHVLQPLDVAAFKPVKGTCRDIVREFRVKHNYAKLKRTDFSREVQNVLTEASSLKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -