Lsal020038.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411808.1:25197942-25198514[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-09 1.8e-06 28.3 0.1 1 36 14 49 14 52 0.93 2 2 2.8 1.3e+03 -0.0 0.0 30 39 140 149 137 151 0.84
Sequence Information
- Coding Sequence
- ATGGTCCGCAATTACAAGCGCAAAAGAGAGAAAACATACACTGAAGCAACTATACAGAGAGCCTTACATGATGTGCGAAATAAGCGCTTGTCCACGCGCGCTGCGGCGTTGCTCTATAAAATACCGGTATCCTCGCTGCACACAAGACTTCACTCTCCTTGGGGCTGTACGGGTAGACCGACTGTGTTTTCACCAAAAACCGAAAAACGCATAGCTGAAAGTCTTGCGATGTTAAGAAATAACGGTTTTCCTTTAACACAGAGAGAAACCGCGGTTTTACTTAAAGAATATATAGTTCGAAATGGATTAATAACACCGTTTAAAGAGGATGTACCAGGCAAGGATTGGTTTCAGTCTTTTCAAAAACGACACGGTGTTACCTTTAAAAAGGATCGAGAGAAAGTTAAAGACCTCACCAAAGGCACATTAGAAAGAGTAGTACAGGAGATAGATTTAAGACATAAAATATATCGAATTGATAGTCAAGGGAAACTGGTTATTGTCGCCGAACCATTGACCAAACGAACTCCATTATTCGTGGCAGCTAACGCAAGCGAAGACAAGTTAGTTTAA
- Protein Sequence
- MVRNYKRKREKTYTEATIQRALHDVRNKRLSTRAAALLYKIPVSSLHTRLHSPWGCTGRPTVFSPKTEKRIAESLAMLRNNGFPLTQRETAVLLKEYIVRNGLITPFKEDVPGKDWFQSFQKRHGVTFKKDREKVKDLTKGTLERVVQEIDLRHKIYRIDSQGKLVIVAEPLTKRTPLFVAANASEDKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -