Lsal003036.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411830.1:10051946-10052518[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-09 1.7e-06 28.4 0.0 4 37 18 51 16 55 0.93 2 2 0.92 4.2e+02 1.5 0.0 22 30 142 150 130 151 0.76
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATATGAAAGAAAATCTGTGCGTGCAGCATGGATAGCTGCCAACTTAGAACATGCTATGAGTTCCGTAAAAAGTAAACAAATGGGAGTTAACGAAGCGTCAAGGACCTACAATATACCATCCAGAACTTTGAGAAGGCACCTTTTTATGGGAAGATCAAAGGGTCCTCTTGGTCGAAATCCTGTTTTCTCGAACGAGTATGAAAAAAAGCTTGTTGCCCATGTAAAAAAATTAGAAAAGGTAGGATTTGCTCCTGTTCGAAAAGACGTGAAAGAAATGGCGTGTCGATTAGCGAAAGAACTAAATATTAAAAATCCATTCTCCGTAACAACCCAATTAGCTGGTGATACATGGTTTAATGGATTTTTGCTACACAACCCTAAATTAAGTCAAAGAAAATCAGAAGGTCTGTCACTCGCTCGAGCTTACGGGGTCAACCGAAAAGACGTTCAAGAGTTTTTTGATTTGTTAGCCAAAATTTACGTTGAAAATGACTTTGCTAATCACCCCGAAGACGTGTATAATATGGATGAGTCTGGAATCCAAGAAAAGACTCAAAGATAA
- Protein Sequence
- MPRKYERKSVRAAWIAANLEHAMSSVKSKQMGVNEASRTYNIPSRTLRRHLFMGRSKGPLGRNPVFSNEYEKKLVAHVKKLEKVGFAPVRKDVKEMACRLAKELNIKNPFSVTTQLAGDTWFNGFLLHNPKLSQRKSEGLSLARAYGVNRKDVQEFFDLLAKIYVENDFANHPEDVYNMDESGIQEKTQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -