Lcom033292.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282487.1:1595759-1608053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0021 0.23 13.2 5.3 1 23 466 488 466 488 0.97 2 16 2.3 2.4e+02 3.6 5.2 2 23 548 568 547 568 0.97 3 16 0.038 4.1 9.2 1.2 2 23 599 621 598 621 0.95 4 16 0.001 0.11 14.2 0.4 1 23 627 650 627 650 0.95 5 16 0.081 8.7 8.2 0.3 1 20 654 673 654 675 0.94 6 16 4.8e-05 0.0051 18.3 0.2 1 23 683 706 683 706 0.96 7 16 1.4 1.5e+02 4.3 1.0 1 23 711 734 711 734 0.85 8 16 0.0066 0.7 11.6 0.0 2 23 747 768 746 768 0.97 9 16 0.022 2.3 10.0 1.6 1 23 774 796 774 796 0.98 10 16 0.33 36 6.2 1.9 2 23 802 822 802 822 0.96 11 16 0.00047 0.05 15.2 1.0 2 23 828 849 828 849 0.97 12 16 0.1 11 7.9 0.1 2 23 854 874 853 874 0.95 13 16 4.2e-05 0.0045 18.5 3.0 1 23 920 942 920 942 0.98 14 16 0.0018 0.19 13.4 1.4 2 23 948 969 947 969 0.96 15 16 0.077 8.2 8.3 0.8 1 23 975 998 975 998 0.93 16 16 0.04 4.3 9.1 1.3 3 23 1005 1026 1004 1026 0.96
Sequence Information
- Coding Sequence
- ATGGCTCCGTGTTCTCCAGAAACTCTTGTAGCTCTGGAGAGCAAACACCCTGCCCCTGCGGATGACCTTTCTTTTCCTGACCCTCCTGATTCAGACATTTATACCCTCACCGTTACAGGTCGAGAGGTAATCTCAGCCGTTTGTTCCTTCCGGAGTGGTTCTGCCGGCGGCCTCGACGGCCTAAGTCCTCAACATCTGAAGGATCTTATCTGCTCAGGCGCCGGGGAAGCTGGTGAGTTGCTCTTGAAGGAGCTTACGGCCCTGGTTAACCTAATGCTCTCAGGCAAGGTGAATGAGGCCGTCATCGACACTCTATATGGGGCCAATTTATGTGCCCTACGGAAGAGAGACGGTGGCATTCGACCTATTGCGGTGGGTACTTCCTACCGTCGTATGGCAGCCAAGATTTGCTGTAAATTTTATGacaacTCCTACCATCAATTTCCACATCCAGAAAGGAATCCTGACCGTTTCAAGGCTTGGGTTGATATAGTTGGTGGGAAGTTAGATAGTCCTGCTGATTACGAACTGTATAGAAAGAAGGTCATCTGTGATATCCATTTTACAGACAAGGACAGGAACCGTAATAACCGGTTAAATTTTCTAGCTGTGCCATCACTACATCTTCCTGGATCACAATCTCCACCAGAACCTCGAATACCAGAAAAAGAAAACGAAACACCATCAGAAGCCACGGACCCAGGTGTTACTGTTGACAATATTGAGATGCAAGAAAGTACTATCCCTGTACATGACAGTTCTAAAAGTGACCATATGAGTGAGCCCGCAGCTATGCAGGATTGCGAATATACTGCCTCAACTGCAAGCTCTGAAAAGATGAACAGTTTGAAGATGAAGCTCAAAAATGTTCTGCACAACTCGAAGTTTTGTGGAATATGTTTGGAAAGTGACGAAAGTATGAACACCATCGATGAAGATCTAGAGATTGTTGTTAATGAAACAACTCGAACTAAGCCTTTGCGGGGTCTAATTGATGTAGTATTTAAAGaggtcAAATACAGCCTCGCAAGTGCATATGTATGCAACAGCTGTTTGGAAAAACTAATTCAGTCTTACATTTTCATAGAAACTGCTAAAGAAACATATCAGATTTTTGACAATTATGTAAAGGATTTATTTAGCATAgctgataatatttttaataagttacCAGAGTCAGACATTGAGATTACAAATGTTGTAATTGTATTAGAAAATAATGTTCATGACTTAAAAGATGAGGTAAAAGATGAACCTATCATAGAGGCAGACGAAAATAAAGAGGAAAATGAATCCACTCATagaagaaataaatttaaatgtgTAAAGTGTCTATCAATGCTACCTACACACAGAGCtttgaaaatacataaaatgaaATGTAAGGAGCAGATATTCCGATGCAGAAAATGTTTCAAACTATTTAGAAATAAAGAACATTTAAAAGCACATCGTGAATTACATTTGAAAGTAAAGTGCAAGTTCTGCCACGAAATACTTCTAAAGACAGAATTACTGGACCACTTTAAAACGGATCATGGAGATACCTTAATTAAATGTTTGAAATGTGAATTATGTTATTCCTTAAAAACATATCAAAGTCACGCTAAAAGCTGCCAACAAATTAAAGAAGACAAACAGCAATGCTTGATGTGTCTGAAGACTTTTACTGAGAATAAATTTAAGTCTCATATCTGCAAACATATTTGTCCGGAATGTACGGAAGTACCTTGCATGCATTACAAGTACTTGAAGTCTTACAGAGAACAGATCTTAAACAATGCTGAGAACACCAAATGCGTTGACTGTGACTATGTTTGTAAAAGAAAAGAGGTATTACTTGGACATGTAAATCGGTACCATTTAAACCGTCATCCATACACATGTGACAAATGTggtaaacaattttattccAAAGTTGTCTTAGGAGCTCATATTGTCAAATTCCACAAGGAGTGTTTTGTGTGCCAGTTTTGTGACTCAGAATTCAGTAATATTAACAATTATAGAAGTCATGTGGAATCCTGTGAAGATATAAGAAGGGAATTTGCTTGTGAGGACTGTCCAGCCTCGTTTGACTCTTCTGATAGTTTGACGAACCATGTGAAGCGAAGACATAGCACAGATATCTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTAAAAGATTCCAAAAGAAAAGAGCATATGGTTAAAGTTCACAGTagtcttcaaataaaaaatagggTAAAAAGTGTGGAATGTGTTGTGTGCCAAGAACTGTTTGATAACCAAGGAGATTTGGTGCAGCATTTGAAATCTCATGGTCCTAACGTAACATATCCATGTAGGGTCTGCAACACGGAGTATCAGACTTTGAGACAGTTTCGGGCACATAACCGCAAACACAAAGGGCCATTTGCCACATGCCATGTATGCGGAAAAGAAATGAGAGAGATCCTGTTGAAGAAACATTTAACTACACACTCCAATTCTATAGAAACTTGTGAAACATGTGGGAGATCTTTTCAAAATATCACTTTGCTAAAATACCATCAGAAAGTTCATTTAGAAAGTGTCCCTTGCCCTAAATGTGAGAAGATGATCAACCCCGCAAGACTACGCAGGCATTGGCGAGGACATCTGATAGAAGAAAATCCTGAGAAAGGAATGAAGAAACAACAGCCTAACTTGAAATGTGAACTGTGTGAATATAAGACATGGAACAACACATTACTAGAATGTCATATGAACCGACATCACTTGAAAATAAAGCCCTATGTCTGCCATATATGCAGCAAAGACTTCATCGGAAAACATTTGTTGAGAAAACATATTGAAACACATGACATGAAAAGTGTTGTCTGCATGGTATGTCTGAAGAGTTTTGCCAATTCTACCTGCTTGAAAATGCATCTGCGTCTGCACACGGGAGAAAAGCCATTCACTTGTGAAATTTGTGGGGACCGGTTTCGGTCATCAAGTATTATGAACGTACATAAGTTAAAGAAGCATTCAGACAAGACTAAAATTTGTCCATTATGTTCGAATAAATTTCACACAATCAGAGATTTGAGGAGacatttgataaaagtgcattGGAAGCAGAAAAATAAGAGGTTTGATCCTCGAGAGTTAAAAGGGttagataaaaaatactatCATTTGTTTCATGATGGTAGAAGAGTTAAAGTTGCTGAGGAAGATGTTGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MAPCSPETLVALESKHPAPADDLSFPDPPDSDIYTLTVTGREVISAVCSFRSGSAGGLDGLSPQHLKDLICSGAGEAGELLLKELTALVNLMLSGKVNEAVIDTLYGANLCALRKRDGGIRPIAVGTSYRRMAAKICCKFYDNSYHQFPHPERNPDRFKAWVDIVGGKLDSPADYELYRKKVICDIHFTDKDRNRNNRLNFLAVPSLHLPGSQSPPEPRIPEKENETPSEATDPGVTVDNIEMQESTIPVHDSSKSDHMSEPAAMQDCEYTASTASSEKMNSLKMKLKNVLHNSKFCGICLESDESMNTIDEDLEIVVNETTRTKPLRGLIDVVFKEVKYSLASAYVCNSCLEKLIQSYIFIETAKETYQIFDNYVKDLFSIADNIFNKLPESDIEITNVVIVLENNVHDLKDEVKDEPIIEADENKEENESTHRRNKFKCVKCLSMLPTHRALKIHKMKCKEQIFRCRKCFKLFRNKEHLKAHRELHLKVKCKFCHEILLKTELLDHFKTDHGDTLIKCLKCELCYSLKTYQSHAKSCQQIKEDKQQCLMCLKTFTENKFKSHICKHICPECTEVPCMHYKYLKSYREQILNNAENTKCVDCDYVCKRKEVLLGHVNRYHLNRHPYTCDKCGKQFYSKVVLGAHIVKFHKECFVCQFCDSEFSNINNYRSHVESCEDIRREFACEDCPASFDSSDSLTNHVKRRHSTDIFPCGLCNKKFLKDSKRKEHMVKVHSSLQIKNRVKSVECVVCQELFDNQGDLVQHLKSHGPNVTYPCRVCNTEYQTLRQFRAHNRKHKGPFATCHVCGKEMREILLKKHLTTHSNSIETCETCGRSFQNITLLKYHQKVHLESVPCPKCEKMINPARLRRHWRGHLIEENPEKGMKKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLRKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSDKTKICPLCSNKFHTIRDLRRHLIKVHWKQKNKRFDPRELKGLDKKYYHLFHDGRRVKVAEEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -