Lcom035444.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282490.1:6320531-6335382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.4e-05 0.0026 19.3 1.1 1 23 591 613 591 613 0.98 2 11 0.09 9.7 8.0 6.8 1 23 620 642 620 643 0.94 3 11 0.032 3.4 9.5 1.1 1 23 647 669 647 669 0.97 4 11 0.00075 0.08 14.6 1.0 1 23 674 697 674 697 0.98 5 11 0.00051 0.055 15.1 0.5 1 23 701 724 701 724 0.96 6 11 3.1 3.3e+02 3.2 0.8 3 21 738 756 737 761 0.91 7 11 8.2 8.8e+02 1.9 0.3 2 23 813 835 812 835 0.91 8 11 0.045 4.8 9.0 0.9 1 23 850 872 850 872 0.87 9 11 0.00023 0.025 16.2 3.0 1 23 878 900 878 900 0.97 10 11 0.00035 0.038 15.6 3.3 1 23 907 929 907 929 0.98 11 11 0.00055 0.058 15.0 0.3 1 23 935 958 935 958 0.95
Sequence Information
- Coding Sequence
- atgccttattgtgccatactggactgtaaaaaccatagtcggactaaaaatctaactcatggaggtgtatcatatcaccgTTTTCCTGATGATccaatttataaagaaatatggCTCAACGCTACTGGTAGATTAAACTGGTTCCCAACAAGAAACAGCACTATATGTTCGCAGCATTTTAAGGAAGacgattttataataaaaaaatctggtaacaGATACATAAAGGATAAGGCAGAACCAAGCTTGAACGTTTTAACTCGTTTTTCTCTGCCTACTTCAACAGCTGCTAGGACCTCCGGTTCGCCGGATTTACCAGCTAGCATCTCCGCTTCACCAGATATGTCGGTGTGCCGAGTGTGTCTAGCTTTGGATGTGCGAATGTTCGATATGAACGACTTCAAACTGACTGAGATGTTCCAGAACGTCACGGGAATATCGGTATGTAACGAAAAGGAGAGCATACTCCATCGCGTTTGTTGGGAGTGTGCTGCACGGCTCAAAGCGGCTGCAGCGTTCAGGAACAAAGCGCTGCTCAGCGATACATTGCTGAAAGATTTAGCAGACATGAAGAAAAGCGACATCGCTAAATTGAAACACGTATATCAGAATACTTTCAAATCGCCTCTTACCATTCAAACTGTATTTGATATTGGATGCGGAGATACCAACCCCGACTACAAAGACATAGAATCCCTCACTGATGAAACAGAGTTTAAGGAAGACATACTATTAGTtgacttacctatgaaaactaACGTAGGATCAGATCCTCTAGCTGAAAATGATTCtaatattcaaatcaaaaataggAAAAATGAAATGATTTCAGCACTCacagatataaaagaaaacagtgaagtatattataacaataatgATATGGTTTTAAGTGAAGATACCGTAATGACTAACGCACCAATAAATGGTGTTAGCTATATAGTTTTAGTAATAGATGATGAAGAGAATAGACCAAAGCTAGATGTGATTAGTAATACTGTGAATGAGTCGTTAAGTGAAGAAGACAGAGAGAGTCTAGCAGAAGTAGCTGCTGCCAATGAAGCTAAGACAGACAAAGTTGGAACTTCGTGTGAACAAGAAAACAGCTTCAACGGCGGGGAGAAACAGAAAATTATTGCGTTAAAGGAAAAGAGTCTTTCGATGGCAGAATTATCTGAGGAAACGGGAAAATCGTCAACTGTCCAAAACATAAACACAATTAACCAATTGAATAACCAGTTAACTCCCAGCTTATCATCAAAAGATTTGAAACCCATAACTCAAGACATATCTGCACCGGCTACTAGTGTTGCCATCAAAGATGAAAACGAAATATTCGTCACAAAAGACATTACGGATGAGAACGATGACGGAATTTACGACCCCGGATTTGATGACCCCGGAATTAACGACCTCGGAATTCACGACCCCGGATTTGACGACAATGGACTTGCAAAAACGGTCGTTTTAAATGACAAAGATGATCCGTCAGAAGAAGTATACATGTTATCTGATAAAGAAAATTATTCCTCAGACGATAGTATTCCTGCAAAAAAAATCAAGGCTAAAAAACCTCGAAAAACGACAGAGAAAGCAGACAAAATTCCTAAAAGAGTGAAAAAGATAAGAGATCCGAAGATAGATCGGCGGAAAAAACCGATTCCAGATGAtttgaatgaaaatatttttacgatTACACAATTGACGTTTGAAGAACAGATAGCTGAGATCGTGAAAAGGCAGGAGAGTGCGAATTATAAGTTATCTTATTTTAAATGCACCGAGTGTTTTAAAGGATTTTCTGATGAAGATGCTTATAATAACCATATGTCGAGGCATACTGATCAATGCGGCGAACACGAATGCAAGGTCTGCAAGATGCATTACAAGCACCTGCGGGCTCTCAAAACGCACATCGCAGCCCACCACGCTAAGAGGTACAGCTGCACACAGTGCACCTACGTCACTAGGAATCGGTCTACGGCGAAGCTACACGGACGCTGGCACAAGGGGACCaagtacagatgtccgcattgTCCGGAGGAGTTCGCTAAACTCACAACTTACTTGAGCCACGTCCGCATCAAGCATCCGTCAGACTTCATTTGTCAATTGTGCGGATACTCCTTCGTCAGCGCCTTAGGCCTCAGGCAGCATAAGAAGATGAAACATCGACTCGAGAATGTACAGATACCGGAAGACGGTCCATTGTGCGAGCTATGTAACGTGCGGTTCATCTCGTCAGAGGCGCACAAACGACATCTCAGTGTTTCAACTAAGCATAATACAGGTACAGAATCAAGGGAATTGAACACGCCGATGAAGGGTCGAAAATCTAAAGAGACGAGAGAGCTCAAGCGACGGGCGCGAGACAAGGACGCAGTTATGAACGAAAGGAGACGAATATACCCCAGTGGGACAGCGAAGGGTCCGACACCTTGTGAACAGTGTGGTGTACAAATAGAAGACATCCGGACGTACCGCAGTCACTTCAAACGCATGCATCCCGACAAGCCCCGCACAATTTACCCCGCCATGAAGAATCCCTACATGTGTGAAGTATGCGGGAAAATGTTCCAGTGGTACTGTCAACTTAAAAACCACGCCGGTATACACACAGACGAACGACCCTTTAAGTGTGAGTTGTGCGGCAAGTCGTACAGAACGACATACAGGCTGGAGGTACACCAGCACCTCCATAGCCAGGAGCGCGTCACCTACGAGTGCAAGGTCTGCAGGAAACACTTCTCCTCGTACAGCAACCGGGGGAGGCATATGCTGATCCACACCGGCGTAAAACCCCACAAATGCGAGATATGTGGCAAGGGCTTCAAGCTCCCAGGTGAGAAGCGAGCACACATAAGTTACGTGCATCAGAAGAAACCGTGGCCGAAGCGAACGAGAGGGAAGCGACGAGacaagtaa
- Protein Sequence
- MPYCAILDCKNHSRTKNLTHGGVSYHRFPDDPIYKEIWLNATGRLNWFPTRNSTICSQHFKEDDFIIKKSGNRYIKDKAEPSLNVLTRFSLPTSTAARTSGSPDLPASISASPDMSVCRVCLALDVRMFDMNDFKLTEMFQNVTGISVCNEKESILHRVCWECAARLKAAAAFRNKALLSDTLLKDLADMKKSDIAKLKHVYQNTFKSPLTIQTVFDIGCGDTNPDYKDIESLTDETEFKEDILLVDLPMKTNVGSDPLAENDSNIQIKNRKNEMISALTDIKENSEVYYNNNDMVLSEDTVMTNAPINGVSYIVLVIDDEENRPKLDVISNTVNESLSEEDRESLAEVAAANEAKTDKVGTSCEQENSFNGGEKQKIIALKEKSLSMAELSEETGKSSTVQNINTINQLNNQLTPSLSSKDLKPITQDISAPATSVAIKDENEIFVTKDITDENDDGIYDPGFDDPGINDLGIHDPGFDDNGLAKTVVLNDKDDPSEEVYMLSDKENYSSDDSIPAKKIKAKKPRKTTEKADKIPKRVKKIRDPKIDRRKKPIPDDLNENIFTITQLTFEEQIAEIVKRQESANYKLSYFKCTECFKGFSDEDAYNNHMSRHTDQCGEHECKVCKMHYKHLRALKTHIAAHHAKRYSCTQCTYVTRNRSTAKLHGRWHKGTKYRCPHCPEEFAKLTTYLSHVRIKHPSDFICQLCGYSFVSALGLRQHKKMKHRLENVQIPEDGPLCELCNVRFISSEAHKRHLSVSTKHNTGTESRELNTPMKGRKSKETRELKRRARDKDAVMNERRRIYPSGTAKGPTPCEQCGVQIEDIRTYRSHFKRMHPDKPRTIYPAMKNPYMCEVCGKMFQWYCQLKNHAGIHTDERPFKCELCGKSYRTTYRLEVHQHLHSQERVTYECKVCRKHFSSYSNRGRHMLIHTGVKPHKCEICGKGFKLPGEKRAHISYVHQKKPWPKRTRGKRRDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888347;
- 90% Identity
- iTF_00888347;
- 80% Identity
- iTF_00888347;