Lcom036745.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282492.1:6704701-6711976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.018 1.9 10.3 1.0 1 21 352 372 352 373 0.96 2 12 1.2 1.2e+02 4.5 0.4 2 23 401 422 401 422 0.95 3 12 0.048 5.1 8.9 0.3 2 23 445 466 444 466 0.97 4 12 0.00053 0.057 15.1 0.1 1 23 470 492 470 492 0.97 5 12 0.004 0.43 12.3 0.3 1 23 567 590 567 590 0.96 6 12 0.25 27 6.6 0.1 2 23 617 638 616 638 0.96 7 12 0.88 94 4.9 1.3 1 23 660 682 660 682 0.97 8 12 1.2e-05 0.0013 20.2 1.4 1 23 686 708 686 708 0.98 9 12 0.95 1e+02 4.8 0.2 1 23 713 736 713 736 0.88 10 12 0.0089 0.95 11.2 0.3 1 23 742 765 742 765 0.90 11 12 0.00085 0.091 14.4 0.6 1 23 772 795 772 795 0.97 12 12 2.8e-05 0.003 19.1 1.7 1 23 802 824 802 824 0.98
Sequence Information
- Coding Sequence
- ATGAAAAATGAACTTGCACGACGTCAAACCGATGTAACGGAAACGTGGATAGGATCGGAAACCCAAGCTTTGGCACTAAAAATTGATAACTATACTCATTATTACAACTATAGAACAGACTCAAAAGGGGGAGGAGTTTCAGCATTTATCCACAATGATCTGAAACATAGTTTGTCGGAGTCTAAGTACTCAGGTGGAAATAACTACTTATGGATACATTTGGACAGGCATGCTTTTGAGGTCGGCGTAGTATACAATCCTGGTAACACTAACTACAAGGAGTTTCTTGAAGAATATGAGTCCCAGCTACAACAAAGAAAGAGAGCAATTGTTTTCGGCGATTTCAACATTGATCTATTATCTAAAAGCAACAGAGAGACTAAACAATACAAAGCTGTAACTAAAGAGACCGGATATGTACTACTAAACAAAGTAACTAAAAAATACTGTACAAGGGACtcggaaacaaaaaaaagtatcatCGATCATATCAGCACAAATTTAAAACACGACAAATTCCACATGGCAATATTTAAGTCTTCTATGTCCGATCACTATCAAATGTACTTAGAACTCAAGAAAGTAAAATCCCCTCGAAAATTACGAGCTCAGTACGaagcaataaattacacaaacttatATAACCTTATGGAGGAAACTGATTATGAGAACCCTCAGAATGATTATCTGGTACTGGAGGATGTGATAAAGACATGTGTTGAAAAAAGTAGAGTTACGAAGACTAAAATACTCAACCCTCCACAAAAGGACTGGATTAATAAGGAGATTATAGCCCAGATCAATCAAAGGAACATGATGGGGATGGAACTTAAAAGTAATCCTAAGAACGAACTAATGAAAGAagcatttgttaaaaaaagaCAACGCTGTCAAACGAGTGAACAAAACGAAGGTGATTACGCATTAGAAAAAATACCCAAGCCGAAATATATACGAAGCGCTAGAACCGAAGCCAGGATTATCACCAAAAGTAATGCCTCAGCTATCCTTGAGTGCTGGTCACTCTTACCCTTCAGATGGAAGAAGAACAGATTTAAATGTGCCTATTGCGAAGATAACTTTACCGACTGTCAAGAACTAAGAAACCATGTCAGAATATGCTCTACAGGTCACAGCATCAAAGATATATACAGTAAATTCAAAGAGATGCCTCTAATTAACGTTGATATAACAAACGCTGTTTGCACTCTGTGTTCGCTCCCACTGACAAATGTCTCGCAAATGAGAGAGCATGTCATTCATCACGGTTTACAATTCAACACGTACCATCCCGATGGCGTGTTGCCATTCTCTTTAGACAAGCAGTCCTGGCAATGCGTCATATGCCTGGAAAAATTCAACAACTTCTTAAAACTCTACGAGCATATGAATGTTCACTATCAGCACTATATATGCGCGACATGTGGGAAAGGATTCATGACTGCTCCTAGACTGCGGAAACATCTGGAAGTACATGTATCTGGTTCCGCTAACGAAGCGGAGGGCAATCTAGGCCTTAGACGCATTAGAAAGTTGAAGGAGATCGTTAGCGACCGACAGATGCGCAGGCGACGACGCGCCAACAAGCAGCTCCCCGAAGAATCAGAGAAAAGAATATCCAAAACTATGATGCGTCGTAACGCTCTGATCCTACTAGAATATTCAACAGCCTGGGCGTTTCGATGGTTCCATAGCGCTTTTTATTGCTCATACTGCGACGCTAAATTTGTAGATGTACCTCTTCTTCGTTTACACGTTAAAAATAATCATCTCAACGACTTACCTACTGACAGAATTTTCTCgaagttaaaagaaaataacatgGTCAAAGTAGATGTTGCAGAGCTTAGCTGTAGGTTGTGTAGTAGAATTCTTAATAGCATTGACGCTTTGAAAGACCATCTTCTCATACACGGAAAAACTTTAAACGTAGAATACAGCGATGGAGTTTTACCGTTCAAGTTAGATGAAGAAGGCTTCACCTGCCAACTGTGCTTCGCCCAATTCCTAACTTTTGCCAAAATGAACGAGCATATGAACACTCATTTTCAAAATTACATTTGTGATTCTTGCGGTAAAGCTTTTTCTTCTAAATCGAGGTTTAGAAAACACGTACAGTCCCACGAAAAAGGAAACTTCCCTTGCGGGGAGTGTGGTGAGGTTTTGGAAACGCGTGCGTCTCGTATGTGTCATATAATGAGGGTTCACAGGAAAGGAGTTCGCTATGCTTGCCCAAGATGCCCTGAAGTTTTTACAACCTACCATACAAGAGCAAAACATTTAGTAGAAGCACACGCTCAACAGAGAAAAGAATACTATTGTAATGCTTGCGACAAAACATTTGACACCAGCTCCAAAAGAGCAGGACACATTCGTGTAACCCATGCGAATGTAGAAAAACGACACTACTGCCCTAACTGTCCTTCGATATTTGTTAGCAAATCAAAATTGCTGCGGCATCTAAGAACACATAGAATGAAATACGACTGA
- Protein Sequence
- MKNELARRQTDVTETWIGSETQALALKIDNYTHYYNYRTDSKGGGVSAFIHNDLKHSLSESKYSGGNNYLWIHLDRHAFEVGVVYNPGNTNYKEFLEEYESQLQQRKRAIVFGDFNIDLLSKSNRETKQYKAVTKETGYVLLNKVTKKYCTRDSETKKSIIDHISTNLKHDKFHMAIFKSSMSDHYQMYLELKKVKSPRKLRAQYEAINYTNLYNLMEETDYENPQNDYLVLEDVIKTCVEKSRVTKTKILNPPQKDWINKEIIAQINQRNMMGMELKSNPKNELMKEAFVKKRQRCQTSEQNEGDYALEKIPKPKYIRSARTEARIITKSNASAILECWSLLPFRWKKNRFKCAYCEDNFTDCQELRNHVRICSTGHSIKDIYSKFKEMPLINVDITNAVCTLCSLPLTNVSQMREHVIHHGLQFNTYHPDGVLPFSLDKQSWQCVICLEKFNNFLKLYEHMNVHYQHYICATCGKGFMTAPRLRKHLEVHVSGSANEAEGNLGLRRIRKLKEIVSDRQMRRRRRANKQLPEESEKRISKTMMRRNALILLEYSTAWAFRWFHSAFYCSYCDAKFVDVPLLRLHVKNNHLNDLPTDRIFSKLKENNMVKVDVAELSCRLCSRILNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFSSKSRFRKHVQSHEKGNFPCGECGEVLETRASRMCHIMRVHRKGVRYACPRCPEVFTTYHTRAKHLVEAHAQQRKEYYCNACDKTFDTSSKRAGHIRVTHANVEKRHYCPNCPSIFVSKSKLLRHLRTHRMKYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -