Lcom030087.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282483.1:9378349-9393861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00018 0.019 16.5 1.2 1 23 264 286 264 286 0.98 2 13 0.098 11 7.9 3.8 1 23 294 317 294 317 0.93 3 13 0.92 98 4.9 0.4 1 23 321 344 321 344 0.90 4 13 0.0069 0.74 11.6 2.3 1 23 419 441 419 441 0.99 5 13 0.00013 0.014 17.0 2.7 2 23 450 472 449 472 0.96 6 13 2.2 2.4e+02 3.7 6.7 1 23 476 498 476 498 0.98 7 13 0.0012 0.13 13.9 2.1 1 23 503 526 503 526 0.98 8 13 1.5 1.6e+02 4.2 3.9 3 23 532 553 530 553 0.86 9 13 0.93 99 4.8 0.2 1 20 572 591 572 593 0.93 10 13 0.055 5.9 8.7 0.2 2 23 639 661 638 661 0.94 11 13 3e-06 0.00032 22.1 0.9 1 23 670 692 670 692 0.98 12 13 0.0017 0.18 13.5 0.8 3 23 700 720 698 720 0.96 13 13 5.7e-06 0.00061 21.3 2.6 1 23 726 749 726 749 0.98
Sequence Information
- Coding Sequence
- ATGTATAATCTCAAGGCGTGTATGGTGTGTTTCAGCACAAATGTAAAGTTGTTTAGCATGAACAGTGTAAAATTACGACAGGAATTCCATTTGATTTCTGGTATCCAGacttCCCACGGAGATGGTATGCCGAATTATTTGTGTTTTCAGTGTTCAGCTGTTGTGCGAAACTTCAAAAAATTTCGTGATCGATGCCACCGTGCTCATTACGCTTTGAAAGAAATTTTAAGTAGAAACAAAGAGATTACTCAAACAAATCTTGAATGCTTAAACCGCAGTATCCTTGATATAATGCCGCCTCTATCTTTCATGAGTTTAGATAAAAATCACTATGAAAAAGTAACATTTCAGTGGAAAAGATCAAATCGTATTGACTGTAATTCTTCCAATCAAAACATACCTATATTTCACTGTAGTACGCTTACTCCTGATTACACTTTTGATGGTGTTACCAATTCCAGTGAATTAGAATTCactgaagagaaaattaaaagagACATTGATGAAACAGGACCTGAAGAACTGCCGGTTGAGTTTGAAGTAGCTAAAGACGAATCTGCTGGCTTTGCATGTACAACAGAAGACACTGAAATACCGGATTCATTTTTGGATAATGATACCTTCAATAGTGATCAAGATATTGATAAATTCCCCGATTTGGCGCTTAACGTAGAGAATACGGTCATAGATGGGACAGATATGGATGAAGAATATGCTACATTGGTTCCAATTTCTGTGAAAGAAGCTAAAGCTGCAATTGAGGTGTATAAAATGTTCACTCAGGGTAAATACCATTGTGAGATATGCAATAAGGCTTATAACAATGCTGAAAGGATGAAGATACATTTACGTATGCATGATAAGcatGTAAGTGGGAACTACCACTGTGGTCTCTGCCAATACTACTACAAAACCGAGTTTCTACTGAAGACTCATATGACTGATAAACATCTGTTCAAGTATTTATGTAGGAAATGTCCGGAAGTCAGTTTTGATCGGTCATCGGCGAAACAGCACTACATTTGGACCCACTTACAAAACGGTAGCAAAAAGAACGCAAACTGGTACGAATCCAGACCAAAATGGATGCAAACCCGAGGAGGAAAACGCGTCAAAGGAGCGGTCACAATAAAACCGGTTAAGAAGAACAGGAAGCTGCCTGAAGACTTTCTTATCTACTCTCCTATTGGTCATGAAGAGCAGTACCGATTGGTCCAAGAGAGACAGCAGTCGAGGAATTATCAAGAAGCCAGGTATCAGTGTGATTTGTGCTACCGAGGGTTCAGAGGTATGCTGACGTATACTAAGCATATGAAGAAACATGATCCTGCACAGTCAGGTCCCTTGCAATGTGACATCTGCAAGATCCATTTCAAAGATCAGAGGAAGCTCTACAAACATATGAACATCACTCACTTGTTCAAATACTCCTGTCAGTTGTGTAGTTATGTGTGCTGCAAtagaggtCAAGCTCACATGCATTATAGATGGCATAAGAACGTCACGTATGAATGTCCTCACTGTAAGAGAGAGTTCATGAAAGCATCGACGCGTCTAACTCACATAAGAATAAAACATCCGTCCATGTGTCTCTGCACTATTTGCGGACACAGTTTTGTGAGCGACTCTGGACTGTATTGTCACAAACAAATAGCTCATACTGAAGAGGAGATAGAACAAAGCAATAAGATGGTTGTGAACACAGCCGACCCGCATTACTGCGCAGACTGTGAGATACAGTTCATGTCGTTCGCGGCATTCACGACGCATCTCGGCAGTTCCTACAAACACGCTACGACTAATCTGTCCATAAAGCCGTCGCGGCGCAGCAAGGCGGAGGAGCCGCGGGCGCGCGGGCGGCCGCGCCGCGGCGCCTGCTCCGAGATCGTCAACAACGGCCTCACCACCTCCAGCACCTGCGAAGTGTGCGGCAAGTTCCTATCAAACGACGTGCAGGCGCGCAAGCACTACGAGTCTGAACACCCCGACACCGAGTACCTGAAGCGGTACATGTGCGACGTCTGCGGACACACTACCAGGCAATACGCGAACCTGATAGTACACATGCGCACGCACACGAACGAGAAGCCGTACGGCTGCCCGCACTGCGACCGCCGGTTCAACATGCCCAGCAACAGAGACAGGCATCTTGTCGTCCATACAGGTGAGAAGCGATATCAGTGTCAGCACTGTAACCGCCGCTTCACGCAGAGCAGTGCCGTGAAGCTGCACATACAGACGGTCCACCTCAAGATACCCTACGCGCCCTGGAATAAGAAGAACAGGAAGCGACGCAAGGAGTTAGAAACAGCGGGGATGTCGACCCCGCTGCTGCTGCCGCCGCCCAGCAAGCTGGCCGCCTACGACGCGCCCGCAGACTATCTCAACGCCTACATCACCTATAACGACGACTaa
- Protein Sequence
- MYNLKACMVCFSTNVKLFSMNSVKLRQEFHLISGIQTSHGDGMPNYLCFQCSAVVRNFKKFRDRCHRAHYALKEILSRNKEITQTNLECLNRSILDIMPPLSFMSLDKNHYEKVTFQWKRSNRIDCNSSNQNIPIFHCSTLTPDYTFDGVTNSSELEFTEEKIKRDIDETGPEELPVEFEVAKDESAGFACTTEDTEIPDSFLDNDTFNSDQDIDKFPDLALNVENTVIDGTDMDEEYATLVPISVKEAKAAIEVYKMFTQGKYHCEICNKAYNNAERMKIHLRMHDKHVSGNYHCGLCQYYYKTEFLLKTHMTDKHLFKYLCRKCPEVSFDRSSAKQHYIWTHLQNGSKKNANWYESRPKWMQTRGGKRVKGAVTIKPVKKNRKLPEDFLIYSPIGHEEQYRLVQERQQSRNYQEARYQCDLCYRGFRGMLTYTKHMKKHDPAQSGPLQCDICKIHFKDQRKLYKHMNITHLFKYSCQLCSYVCCNRGQAHMHYRWHKNVTYECPHCKREFMKASTRLTHIRIKHPSMCLCTICGHSFVSDSGLYCHKQIAHTEEEIEQSNKMVVNTADPHYCADCEIQFMSFAAFTTHLGSSYKHATTNLSIKPSRRSKAEEPRARGRPRRGACSEIVNNGLTTSSTCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLLLPPPSKLAAYDAPADYLNAYITYNDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301697;
- 90% Identity
- iTF_00851141;
- 80% Identity
- -