Lcom014092.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282469.1:9215194-9222999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00027 0.028 16.0 0.1 3 23 176 196 174 196 0.96 2 11 0.027 2.8 9.7 0.2 2 23 201 222 201 222 0.97 3 11 0.034 3.7 9.4 8.4 2 23 229 251 228 251 0.96 4 11 0.0021 0.23 13.2 0.8 3 23 261 282 259 282 0.94 5 11 2.1e-06 0.00022 22.6 0.5 1 23 287 309 287 309 0.98 6 11 0.0013 0.14 13.8 3.3 1 23 315 338 315 338 0.96 7 11 0.76 81 5.1 3.2 2 20 344 362 343 364 0.83 8 11 0.36 38 6.2 0.2 3 23 370 389 368 389 0.93 9 11 8.7e-05 0.0093 17.5 0.2 1 23 395 417 395 417 0.98 10 11 0.0003 0.032 15.8 0.4 2 23 424 445 423 445 0.98 11 11 3.5e-07 3.8e-05 25.0 1.6 1 23 451 473 451 473 0.98
Sequence Information
- Coding Sequence
- ATGGAGATGTGTAGAGTGTGTTTATCAACTGAAAAAGAAATGCTTCCACTGGATGAAACATTCATTATCAACTATAACTTGTTGACAAATCTTAATATAACCTTATTAGATGGTATGCCACAATATTCATGTCAGACATGTATGGACACAGTCAAATGTTTTATAGAATTTAGAGAAAAGTCTATAACAGCAGAAACTACATTGAGGGagattatttattctGAAATTAAAGCAGAAAATAAGGCACTTGTTATAGAAGTTGAAAAGGACACTACTATTTATGAAAATGAGAAGCTGGCGATTAAATCAGAAATAAAGGAAGAAAATTATTATGATGCTGCTTCAATTTTAGACAATAACTTTGATGAGGCCTTTTCTGAATATGAAGAAGATgacaacattattataaaaaaagaagatgATGTGAAACTaaagaagataaataaaaataaatataagaagcTCAAAGTAAAAGCATCTAAATTATTAGAAGGTATCGCCAATGGACTTGAGGACAAGTGGTTTTGTGGTATTTGCCCTCAGACATTTGAAGACAAAATAGAGCTGAATAATCATCTAGATAGCCATAACAAGGATCGACAATGTGATCTTTGTAGAGAGCAACTAAATAGCTTGTCGCAGCTTCTTGCTCATAGACTGATACATGTCCcattaaaacaaagtaaatgtCACATATGTGAGAAGAAATACAAGTCATGTCTTTATTTGGAACATCACTATAGAAATTTTCACATTGAAGAAGATGACAGGAATCTTTTTTGTAATGAATGTCCATGGACTTGTAATTCACCAAAAAAGCTTAGCAGTCACATTCTTCAAGTTCATTCCAGTATAAAATACATCTGTGACATTTGTTCTAAAGGTTTCCAAAGTAAACCGAATTTAAAGTCGCATATAAGGTCACATGGTAAAAATAAAGCTTATGTTTGTGATATGTGTGGATTCTCTTGCAAACATAGTGGTGGATTAAAAGACCATAAAATAAGAAGACACAATCCAGCGAGAGTTTATTGTAAAAAGTGCAAGAGGGCCTTTCCTACTCAAGAGGACCATGATAGGCATAAATGTACACGAAAGTCACAAATATGCCCCATCTGTGGCCTTCAGCTTGAGAACATTAGACTATCGCAGCATATGAGGAAACACAGCGACAGTCCAGGGTACGAGTGCACTAGATGCCCTGCCAAGTACAAGTCGAAAGGCGCTTTGATAGCTCACCTGAATCGACACGACGGCCTAAGAACCAAGCAGTGTGAATACTGCCCCGCCAAGTTCTACACTGCCACTGTTCTCATCAAACATCGACGGATACATACAGgtgAAAAACCATACGTATGCAAGGTGTGCAACAAAGGATTTACAGGCAATCACAACCTCAAAGTACATATGAAAGTACACGGGGAATATTTGATTGTTAAAAAGAATAGTGAACAAGAGGATTTAACTAAATTTAATGTTACCAAGTGGAGGTAG
- Protein Sequence
- MEMCRVCLSTEKEMLPLDETFIINYNLLTNLNITLLDGMPQYSCQTCMDTVKCFIEFREKSITAETTLREIIYSEIKAENKALVIEVEKDTTIYENEKLAIKSEIKEENYYDAASILDNNFDEAFSEYEEDDNIIIKKEDDVKLKKINKNKYKKLKVKASKLLEGIANGLEDKWFCGICPQTFEDKIELNNHLDSHNKDRQCDLCREQLNSLSQLLAHRLIHVPLKQSKCHICEKKYKSCLYLEHHYRNFHIEEDDRNLFCNECPWTCNSPKKLSSHILQVHSSIKYICDICSKGFQSKPNLKSHIRSHGKNKAYVCDMCGFSCKHSGGLKDHKIRRHNPARVYCKKCKRAFPTQEDHDRHKCTRKSQICPICGLQLENIRLSQHMRKHSDSPGYECTRCPAKYKSKGALIAHLNRHDGLRTKQCEYCPAKFYTATVLIKHRRIHTGEKPYVCKVCNKGFTGNHNLKVHMKVHGEYLIVKKNSEQEDLTKFNVTKWR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852122;
- 90% Identity
- iTF_01028586; iTF_01029529;
- 80% Identity
- -