Lcom033294.2
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282487.1:1618396-1631211[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00073 0.078 14.6 5.1 1 23 311 333 311 333 0.97 2 17 0.5 54 5.7 0.3 2 23 337 358 336 358 0.95 3 17 1.7 1.9e+02 4.0 3.1 2 23 393 413 392 413 0.96 4 17 0.027 2.8 9.7 1.1 2 23 444 466 443 466 0.96 5 17 0.004 0.43 12.3 0.9 1 23 472 495 472 495 0.93 6 17 0.047 5 8.9 0.1 1 20 499 518 499 520 0.93 7 17 0.00011 0.012 17.2 0.3 1 23 528 551 528 551 0.96 8 17 3.8 4.1e+02 2.9 0.4 1 20 556 575 556 579 0.71 9 17 0.00026 0.028 16.0 0.1 2 23 588 609 587 609 0.97 10 17 0.13 14 7.5 1.3 1 23 615 637 615 637 0.97 11 17 4.3 4.6e+02 2.7 3.6 2 23 643 663 643 663 0.92 12 17 3.6e-06 0.00038 21.9 1.2 2 23 668 689 667 689 0.97 13 17 0.28 30 6.5 0.1 2 23 694 714 693 714 0.95 14 17 2e-05 0.0021 19.6 4.4 1 23 757 779 757 779 0.99 15 17 0.00035 0.037 15.6 0.6 1 23 784 806 784 806 0.98 16 17 0.019 2.1 10.1 0.4 1 23 812 835 812 835 0.96 17 17 0.0097 1 11.1 2.1 3 23 842 863 841 863 0.96
Sequence Information
- Coding Sequence
- ATGTCATCGAAAAAGAGATGCTGTGTTCCTGGGTGCAAGAGCACACCACTCAACAGTGGAAGTATGGAACAAGATGTGCATCTTCATACATTCCCAAATCCTGATAAAGATAGAGAACGATTCAACAGCTGGCTGTATAACATTGGAGgaCTCAAAGTAACAGATAGAAAGCCATTGCAAGGTCTTGAAAATCTGTCAAAGCAATCAACATCTACAGCTCCGGAAAAAACGGCGTGTGAGCAAGTACCACCCGCTTCTCAAAGTACTGTAGACGCTGACTCCTCAGACTCCCAGAATATCCCAGAAACTCCTCATCGAGTCAAGAAGTTTATTCAGAAAGCTTCAGGCTTTAAAGATTTGGACAGCTTCAAGCTGAAGCTCAAAAGTGTTCTGCACAGCTCGAAGTTTTGTGGAATATGCTTGGAAAGTAACGAAAGTATGAACACCATCGATGAGGATCTAGAGATTGTTACTTGTGAACGAACTCATGCGACGCCTGTGCGGGGTCTAATCGATGTAGTGTTTAAAGAGACCAATTACAGCCTCGCAAGTTCAAACATATGCAACAGCTGTTTGGAAAAGCTGATCCAGTCTTACATTTTCATAGAAACTGCTAAAGAAACATCCCAGATTTTTGGCGATTATGTAAAAGATTTATTTAGCATAgctgataatatttttaatcacttACCGGAGTCCAAAATTGAAATTACAAATGTTGTAATTGCGTTAGAAAATAATGTTCATGATTCTCTTGAAGATTCTCGTGAAGATGAGCCTATTATAGAGACagacaaaaataatgaaattgttGAAGAGAATAATGAATCCACTCttataagaaataaatttaaatgtgTGAAGTGTCTGTCAATGCTACCTACTTACAGAACtttgaaaatacataaaatgaaATGTAAGGGACCGATATTCCGATGCAAAACGTGTTTCAAACTATTTAGAAATAAAGAACATTTAAAAGCACATCGTGAATTACATTTGAAAGTAAAGTGCAAGTTCTGCCCCGAAATACTTCTCAAGAGAGAATTGCAGGACCACATTAAAACGGACCATGGAGATAACTTAACAAAGTGTTTGAAATGTGAATTATTTTATCCGTTAGGCACGTATCAAAGTCACACTGAAGTCTGCCAGCAAATTAAAGAAGACAAACAGCAATGCTTGATGTGTCtgaagacttttactgaaaacgAAATTAAATCCCATATCTGCAAGCATAGTTGTCCGGAATGTACGGAAGTACCTTGCATGCATTACAAGTACTTGAAGTCTTATAGAGAACAGATCTTAAACAATGCTGAGAACACCAAATGCGTTGACTGTGACTATGTTTGTAAAAGTAAACAGGTATTACTTGAACACGTAAACCGGGACCATTCAAACCATCATCCGCACTCATGTGACAAATGTGGAAAACAATTTTATTCCAAAGTTGTCTTAGGAGCTCATATTGTCAGATTCCACGAGGAGTGTTTTGTGTGCCAGTTTTGTGACACAGAATTCAGTAATATTGTTAGTTATGAAAGCCACGTGGAATCCTGTGAAGATATAAGAAGGGAGTTTGCTTGTGAGAACTGTCCAGCCTCGTTTGACTCTTCTGATAGTTTGACGAACCATGTGAAGCGAAGACATAGCACAGATATCTTCCCATGTGGCCTTTGCAATAAAGAGTTCCTGAAAGATGCCAAACGAAAAGAGCATATGGTTAAAGTTCACAGTGgctttaaaatgaaaaatgtggAATGTGTTGGGTGCCAAGTATCGTTTGATAGCCAAGAAGATTTGGTGCGGCATTTGAAATCTCATGGTCCTAACGTAACATATCCATGTTTGATCTGCAACACGGAGTATCAGACTTTGAGACAGTTTCATGCACATAACCAAGTACACAAAGGGCCATTTGCCACATGCCATGTTTGTGGTAAAGAAATGAGAGAGATCCTGCTGAAAAAACATTTAACTCACCACTCGAATTCTACTACTTGTGGAACATGTGGAAAATCTTTTCGAAATAtctctttattaaaaactcATCAGAAAGTTCATTTAGAAAGTGTCCCTTGTCCTAAATGTGAGAAAATGATCAACCCAGCGAGACTACGCACGCATTGGCGAGGACATCTGATGGAAGAAAAAGGAATGAAGAAACAACAGCCTAAATTGAAATGTAATCTGTGTGAATATAAGACCTGGGACAACACACAACTAGAATGTCATATGAACCAATACCACTTAAAAATGAAGCCCTATGTCTGCCATATATGCAGCAAAGACTTCACCGGAAAACATTTGCTAAGCAGACATATTAAAACACATGGCATGAAAAGTTTTGTCTGCATGGTATGTCTGAAGAGTTTTGCCAATTCTACCCGCTTGAAAATCCATCTGCGTCTACACACAGGAGAAAAGCCATTCACTTGTGAAATTTGTGGGGACCAATTTCGGGTAATAAAAAATTTGATCATCCATAAGTCAAGGAAGCATTCAGAGAAGACTAAAATTTGTCCGTTATgttcaaataaatttcatacCAACAGAGATTTGAAGACACACTTGATGCGAGTACATTGGAAGCACAAAAATACGGATCCTCGACATGTGAAAGGACTAGATAAAAAATACTATCATTGGTTCCATGATGGTAGAAGAGCGAAACTtactgatgatgatgttgaattATACATGCCTTGTTGA
- Protein Sequence
- MSSKKRCCVPGCKSTPLNSGSMEQDVHLHTFPNPDKDRERFNSWLYNIGGLKVTDRKPLQGLENLSKQSTSTAPEKTACEQVPPASQSTVDADSSDSQNIPETPHRVKKFIQKASGFKDLDSFKLKLKSVLHSSKFCGICLESNESMNTIDEDLEIVTCERTHATPVRGLIDVVFKETNYSLASSNICNSCLEKLIQSYIFIETAKETSQIFGDYVKDLFSIADNIFNHLPESKIEITNVVIALENNVHDSLEDSREDEPIIETDKNNEIVEENNESTLIRNKFKCVKCLSMLPTYRTLKIHKMKCKGPIFRCKTCFKLFRNKEHLKAHRELHLKVKCKFCPEILLKRELQDHIKTDHGDNLTKCLKCELFYPLGTYQSHTEVCQQIKEDKQQCLMCLKTFTENEIKSHICKHSCPECTEVPCMHYKYLKSYREQILNNAENTKCVDCDYVCKSKQVLLEHVNRDHSNHHPHSCDKCGKQFYSKVVLGAHIVRFHEECFVCQFCDTEFSNIVSYESHVESCEDIRREFACENCPASFDSSDSLTNHVKRRHSTDIFPCGLCNKEFLKDAKRKEHMVKVHSGFKMKNVECVGCQVSFDSQEDLVRHLKSHGPNVTYPCLICNTEYQTLRQFHAHNQVHKGPFATCHVCGKEMREILLKKHLTHHSNSTTCGTCGKSFRNISLLKTHQKVHLESVPCPKCEKMINPARLRTHWRGHLMEEKGMKKQQPKLKCNLCEYKTWDNTQLECHMNQYHLKMKPYVCHICSKDFTGKHLLSRHIKTHGMKSFVCMVCLKSFANSTRLKIHLRLHTGEKPFTCEICGDQFRVIKNLIIHKSRKHSEKTKICPLCSNKFHTNRDLKTHLMRVHWKHKNTDPRHVKGLDKKYYHWFHDGRRAKLTDDDVELYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -