Basic Information

Insect: Leucania comma
Gene Symbol: -
Assembly: GCA_958295575.1
Location: OY282490.1:6205956-6240216[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0001 0.011 17.3 4.2 2 23 458 480 457 480 0.96

2 17 0.0082 0.87 11.3 1.2 1 23 511 534 511 534 0.97

3 17 0.011 1.2 10.9 0.1 1 23 538 561 538 561 0.94

4 17 1.2 1.3e+02 4.5 0.7 3 22 575 594 574 598 0.93

5 17 0.0043 0.46 12.2 0.9 2 23 685 706 684 706 0.93

6 17 1.5e-06 0.00016 23.1 1.6 1 23 712 734 712 734 0.99

7 17 0.00012 0.013 17.1 3.7 1 23 741 763 741 763 0.98

8 17 0.0029 0.31 12.7 0.3 2 23 770 792 769 792 0.93

9 17 0.0011 0.12 14.0 0.4 1 23 1229 1251 1229 1251 0.98

10 17 0.071 7.6 8.4 1.8 2 23 1259 1281 1258 1281 0.96

11 17 0.00037 0.04 15.5 0.6 1 23 1312 1335 1312 1335 0.97

12 17 0.0022 0.23 13.1 0.3 1 23 1339 1362 1339 1362 0.97

13 17 2.3 2.5e+02 3.6 0.6 3 21 1376 1394 1375 1399 0.93

14 17 0.71 75 5.2 2.9 1 19 1487 1505 1487 1509 0.81

15 17 3.1e-06 0.00033 22.1 3.0 1 23 1515 1537 1515 1537 0.98

16 17 0.00013 0.014 17.0 2.9 1 23 1544 1566 1544 1566 0.96

17 17 0.00014 0.015 16.9 0.4 1 23 1572 1595 1572 1595 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0001	0.011	17.3	4.2	2	23	458	480	457	480	0.96
2	17	0.0082	0.87	11.3	1.2	1	23	511	534	511	534	0.97
3	17	0.011	1.2	10.9	0.1	1	23	538	561	538	561	0.94
4	17	1.2	1.3e+02	4.5	0.7	3	22	575	594	574	598	0.93
5	17	0.0043	0.46	12.2	0.9	2	23	685	706	684	706	0.93
6	17	1.5e-06	0.00016	23.1	1.6	1	23	712	734	712	734	0.99
7	17	0.00012	0.013	17.1	3.7	1	23	741	763	741	763	0.98
8	17	0.0029	0.31	12.7	0.3	2	23	770	792	769	792	0.93
9	17	0.0011	0.12	14.0	0.4	1	23	1229	1251	1229	1251	0.98
10	17	0.071	7.6	8.4	1.8	2	23	1259	1281	1258	1281	0.96
11	17	0.00037	0.04	15.5	0.6	1	23	1312	1335	1312	1335	0.97
12	17	0.0022	0.23	13.1	0.3	1	23	1339	1362	1339	1362	0.97
13	17	2.3	2.5e+02	3.6	0.6	3	21	1376	1394	1375	1399	0.93
14	17	0.71	75	5.2	2.9	1	19	1487	1505	1487	1509	0.81
15	17	3.1e-06	0.00033	22.1	3.0	1	23	1515	1537	1515	1537	0.98
16	17	0.00013	0.014	17.0	2.9	1	23	1544	1566	1544	1566	0.96
17	17	0.00014	0.015	16.9	0.4	1	23	1572	1595	1572	1595	0.93

Sequence Information

Coding Sequence: ATGTTCGATATGAACGACTTCAAACTGACTGATATGTTCCAGAATATCACGGGAATATCGGTATGCGACGAAAAGGAGAACATACTCCGTCGCGTTTGTTGGGAGTGTGCTGCGCGGCTCACAGCGGCTGCAGCGTTTAGGAACAAAGCGCTGCTCAGCGACGCATTGCTGAAAGATAAAGTACTAAACAAAAGCGACATCGCTAAATTGAAACATATTTATCAAAACGCTCTCAAATCACCTCTTACTATTCAAACTGTCTTCACTTCATTTGATATTGGATGCGAAGATACCAGCCCCGATTACAAAGAAATAGAATCCCTCACTGATGAAAAAGAGATTAAGGAAGAAGAACCGTTAGTAATTTTACCTATGAAAACTAACGTTGGATCTGATCCTCTAGCAGAAAATGATTCCAATATTCAAatcgattttataaaaaatgaaatcatttcAGCACTCACAGACACAACAGAAAAcagtgaaatatattataacaataatgATAAGGTTTTAAATGAAGATGCCGTAATGACTAACGCATCAAAAAATGATATTAGCTATATAGATTTAGCAATAGGTGATGAAGAGAATAAACCAAAGCTAGAGGTGATCAGTAATACTGTGAATGAGTTTTTAAGTGACGAAGACACAGAGACTCTAGCAGAAGTAGCAGCTGCCAATAAAGCTAAGAAAATGATGATCGGGAAGGTTGGAGCTTCGTGTGAACAAGGAAACGGGCCCAACGACGGGGAGAAACAGAAATTTATTGTGTTACAAGAAAATGGTCTGTCGGTGGCAGAAATATCTGAGGAAACGGTAAAATCGGACTTATCTCCATCGACTTGCAATGTTGCCATCAAAGACGACGAAATATTCGCCAAAAATGACATCACGGATAAGAACCATGACGGATTTAACGACGCCGGATTTGAAGACGGCTTAAATGTAGATACGGATGCCTTAAGCAACAGAGATGGATCGTCAGAAGAAGAAAACGCGTTGTctgataaagaaataaaagattCATCTAACGATAATCATCCTGCAGAAAAATACAAGGCGAAAACTACTCGAAAAACGAAAGAGAAAGCAGTCAAAACCGCTAAAGAAGTGCAAAAGACAAAAGATCCGACGAAACGGAAGACCGATCGGCGGAAAAAACCGATTGCAAACGATGATTGGAAAGAAACTCTTTTTACGATTACACTATTGACGTTTGAAGAACAGATAGCTGAATTCGTGAAAAGGCAGGAGAGTGCAAGTTATAAGAATTCTTTTTTGAAATGCACCGCGTGTTTTAGTGGGTATGCGGAGGAACATGCTTATAAAAGCCATATGTCGAGGCATACTGACctattCGGGGAACTTGAATGCAAGATCTGCAAGAAGCATTTCAAAAATTGGCATAAACTCAATGACCACATAACAACTGTACATGCTCGGAGATACAGCTGCAAACAGTGCACCTTCGTCACTATGCATCGACAGACAGCGAAGCTACACGGAAGCTGGCACAAGGGGACCaagtacagatgtccgcattgTCCGGAGGAGTTCGTTAAATTCACAACATACATGGGCCACGTCCGCGTCAAGCACCCGTCAGACTTCGTTTGCGATCTTTGCGGCTATTCCTTCATCAGCGCCAAAGGCATCGCGGTACATAAAAAGCTGAAACATCGACTAGAGAACGTGCAGATACCGGAAGACGGTCCATTGTGCGAGCTATGTAACGTGCGGTTCATCTCGTCAGAGGCGCACAAACGACATCTCAGGGTTTCAGCTAAACATAACACAGGTAAAAGAGAATTGAACAAGCTGAAGAAgagtaaaaaatctaaaaagatGAAGGAGTCCGATAGAGACAAGGACACAGATATTGACGAAAGGAGACGGATATTCCTCAGTCAGATGAGGAAGGCAGAGGAACCGATACCTTGTGAACAGTGTGGTATTCAACTACAAGGTGCCCGGGCGTACCACTTTCACTTCAAAACCAAACACCCCGACAAGAACAGAACGAACTACCCGGCCATGAAGAACCCCTGCATGTGTGAAGTGTGCGGGAAAATGTTTCAGAGCTACGCTCTCTTGAAATATCATACTGGGGTGCACACGGGCGAAAAAACCTTCAAGTGCGATTCGTGCGGCAAGTCGTACAGATCGAGGCAAAATCTGAACGCGCACCGGCGCGTGCACAGCCAGGAGCGCCGCACCTACGCGTGCAAGCTCTGCGGGAAAACATTCTCTACATCCGGCAACTGCTCTAGGCATATGTTTACTCACATCGACGTAAGACCCTCCAAATGCGAAATGTGTGGCAAGGGCTTCAAGACTCTAGCTGACAAGAAAGCACACGTAAGTTACGTTCATCTGAAGAAACCGTGGCCGAAGCGAAAGAGAGAAAAgcgaagaaataaaaacaaaaaGATTCCAAAAGACCCGAAGCTGCGTGCAGCATGGCTACAGGCCTTGTCTATCCCAAACTGGATGACGTTGAACGGAGCTGCAATTTGCTCGGATCATTTCAAAGAAGATGATTTTGTCCTCACCAAGCAAGGGACCAGGAGGGTTAAGAAAGGAGTTGTACCGTTTATTGAAGCTTGCAGGGTATGCCTGTCTCTGGACTTGAAGATGTATCAATTGAGAGACGTCAGTTTGGGCAAATGTTATCTAGATATTGTGGGAATCCCGCCAAGATCGGACGCGAAGTACAAGCTTCCTATGGGCATCTGTTGGGAATGCACTGCAAGACTGGAGTCAGCAGCGTCATTCAAGGCTAAAGCACTTTTCACGGAAGCCCTGCTGCAAGAACATTTGAAGAACAATGCTGATctAAACATCACTGACATACAAAACTATCAACGTGAGCATACAAACTTAAAACCATCAATGGCTGTCCAAGAAGTCTTTAAATTTAACAGTAATGATTTCGAAGCACACGCTCCAAACACAATTAAATCAGAAGCAATAGGTATTCCGCACAACGAAGAAATCGAAGTTGAAGTACAGAATTTAGTGACGGAAACTATCACTATAAAAGATGAAAGCAAAAATGTAATAATCGAAGAAACTTGTCCTGCAAGTGATGTCAAAACAGAAATCGATTTAATCCCTATAACAGAAATCACTATCGCTAATAATCAAATCGATTTTGAAGACTTAATCACAAATGATGGTTGTATAGTTAAAGAAAATTTGTATGCAAAAGACAATAAGGTTAGCTtagataatattgttttattcaaaAGTGAAGCAATCAATGATAATACAGTGGATCTTACTAATAACATTTCCCTAGAGAAGGCTGGTGATAATGTCTTTGGCGATGCTGACGATAACAATAGTAACGTAATGGGTTTTAACGATGATGTAGTCTGTATTGGTGAAGATGACGATGATGGGAAGGTCGTAAATGAAACAGTTGTGTCaggaaagaagaaaaaagaaagaaataaaaatgcgaAGACGGCTGTCAAGAAGAAAGGGACGAAGAGGACTTATGATGATGTTGTTATATGGGTCAAAGGAAAGAAGCCGAAAAACCCAAATAAAAAACCTTATGTAAAACCTTGTAAACCGATCGATGAGAATATATTCACAGTGAATACTTTGAACCACGACGAATTGAGGCGAGAGGTACTGGCACGCAAGGATGGAGACCAATATAACCTGTCGCCGTACAGATGTGAAGTGTGTTACAAAGGGTTTCCTACGGAGGATAAGCAGGCCAGACATATGATCAAGCATAGCGAGGCAAGCGGATCTCTGAAGTGCAACATATGTTATGTGCGCGTGAAGAGAGTGTGTGATTTGCGCGCTCATATGACAAGACAACACTCCTCGGAGTTCATATGTAAACTCTGCCCTTTGATCACTAGGTGTCGgaacgTGGCGTTAGGACACGTGAAGTATCACGAGGGGAACAAATTCGAGTGTCCACAGTGCTCTATCGTGTTCGagaaaaaaacaactttacTGAATCATTTGCGTTTGAAGCACATGTCTGCGTTTGTCTGTGATCTGTGTGGCTACACGTTTGTAAGTAAGACTGGCGTTGACGTACACAAGAGAATGAGACATAAGCtgtttgataaaaatACGGAATTCAAAGGGAAGTTCTGCGAAGTGTGTGATGTCAAGTTCTTGAGTGAAAAGGCGTACAACAAACATCTGCGATTGTCTTCGAAGCATATATCGGAAGATGACCCcaacCGTATAAGCAACGACCCCTCGATAAAGCAACGTCGGCTCAGCTCCTGGCTGTACGAGCGCCGTTTCATCCGTCGACCCGTCATCCACCGGAAAGACGCGAACAGTGGGCCAGCAGCGAACCAACCATTAATTTGTGAGCAGTGTGGCGAGGTACAAGAAAGTCGCCGCGCATACGTGACGCACTTCAAGGATCACCACCCTGGCATCAAACGCACGCAATTCAGTTACTATCCCTCGCCCTACATGTGTGAGCATTGTGGAAAATTCTTCTTGaACTCAACGACTCTATCCTGCCATATGTGGGTGCACACGGGTCAGAAGCGTTTCCAATGTGACCACTGCAACAAGACGTTCACGATGAAGTCCAACCTGGCGGGCCACATGCAACAGCACGAGGGCGTGCGGCGCACGTACGATTGTCGCGTCTGCAGCAAACAGTTCACGTTTAGTTACAACCTTACTAGACATATGTTTCTGCATACAGGCCTGCGGCCCTACAAATGCGATGCCTGTGAGAAGACATTCCGTACGAGCGGGGAACTTCGATCTCACGTCGACTACGTTCACCTGAAGAAGCCACGACCCAAACGCGTCAGACGGAAGGCGAAGAAATGCGAGATGCCCAACTTAGAGTATTGA
Protein Sequence: MFDMNDFKLTDMFQNITGISVCDEKENILRRVCWECAARLTAAAAFRNKALLSDALLKDKVLNKSDIAKLKHIYQNALKSPLTIQTVFTSFDIGCEDTSPDYKEIESLTDEKEIKEEEPLVILPMKTNVGSDPLAENDSNIQIDFIKNEIISALTDTTENSEIYYNNNDKVLNEDAVMTNASKNDISYIDLAIGDEENKPKLEVISNTVNEFLSDEDTETLAEVAAANKAKKMMIGKVGASCEQGNGPNDGEKQKFIVLQENGLSVAEISEETVKSDLSPSTCNVAIKDDEIFAKNDITDKNHDGFNDAGFEDGLNVDTDALSNRDGSSEEENALSDKEIKDSSNDNHPAEKYKAKTTRKTKEKAVKTAKEVQKTKDPTKRKTDRRKKPIANDDWKETLFTITLLTFEEQIAEFVKRQESASYKNSFLKCTACFSGYAEEHAYKSHMSRHTDLFGELECKICKKHFKNWHKLNDHITTVHARRYSCKQCTFVTMHRQTAKLHGSWHKGTKYRCPHCPEEFVKFTTYMGHVRVKHPSDFVCDLCGYSFISAKGIAVHKKLKHRLENVQIPEDGPLCELCNVRFISSEAHKRHLRVSAKHNTGKRELNKLKKSKKSKKMKESDRDKDTDIDERRRIFLSQMRKAEEPIPCEQCGIQLQGARAYHFHFKTKHPDKNRTNYPAMKNPCMCEVCGKMFQSYALLKYHTGVHTGEKTFKCDSCGKSYRSRQNLNAHRRVHSQERRTYACKLCGKTFSTSGNCSRHMFTHIDVRPSKCEMCGKGFKTLADKKAHVSYVHLKKPWPKRKREKRRNKNKKIPKDPKLRAAWLQALSIPNWMTLNGAAICSDHFKEDDFVLTKQGTRRVKKGVVPFIEACRVCLSLDLKMYQLRDVSLGKCYLDIVGIPPRSDAKYKLPMGICWECTARLESAASFKAKALFTEALLQEHLKNNADLNITDIQNYQREHTNLKPSMAVQEVFKFNSNDFEAHAPNTIKSEAIGIPHNEEIEVEVQNLVTETITIKDESKNVIIEETCPASDVKTEIDLIPITEITIANNQIDFEDLITNDGCIVKENLYAKDNKVSLDNIVLFKSEAINDNTVDLTNNISLEKAGDNVFGDADDNNSNVMGFNDDVVCIGEDDDDGKVVNETVVSGKKKKERNKNAKTAVKKKGTKRTYDDVVIWVKGKKPKNPNKKPYVKPCKPIDENIFTVNTLNHDELRREVLARKDGDQYNLSPYRCEVCYKGFPTEDKQARHMIKHSEASGSLKCNICYVRVKRVCDLRAHMTRQHSSEFICKLCPLITRCRNVALGHVKYHEGNKFECPQCSIVFEKKTTLLNHLRLKHMSAFVCDLCGYTFVSKTGVDVHKRMRHKLFDKNTEFKGKFCEVCDVKFLSEKAYNKHLRLSSKHISEDDPNRISNDPSIKQRRLSSWLYERRFIRRPVIHRKDANSGPAANQPLICEQCGEVQESRRAYVTHFKDHHPGIKRTQFSYYPSPYMCEHCGKFFLNSTTLSCHMWVHTGQKRFQCDHCNKTFTMKSNLAGHMQQHEGVRRTYDCRVCSKQFTFSYNLTRHMFLHTGLRPYKCDACEKTFRTSGELRSHVDYVHLKKPRPKRVRRKAKKCEMPNLEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00888366;
90% Identity: iTF_00888366;
80% Identity: iTF_00888366;