Basic Information

Insect: Leucania comma
Gene Symbol: -
Assembly: GCA_958295575.1
Location: OY282476.1:3184511-3193792[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00031 0.033 15.8 1.6 1 23 276 298 276 298 0.98

2 12 0.0017 0.19 13.4 1.3 2 23 306 327 305 327 0.94

3 12 0.87 93 4.9 0.3 1 23 331 353 331 353 0.94

4 12 0.00013 0.014 17.0 0.9 1 23 358 381 358 381 0.98

5 12 0.0061 0.65 11.7 0.2 1 23 385 408 385 408 0.94

6 12 0.0042 0.45 12.2 0.3 2 20 425 443 425 449 0.93

7 12 0.001 0.11 14.2 1.8 3 23 459 480 459 480 0.98

8 12 0.05 5.4 8.8 0.6 2 23 500 522 499 522 0.97

9 12 2.2e-05 0.0024 19.4 1.4 1 23 533 555 533 555 0.97

10 12 2.5e-06 0.00027 22.3 1.4 1 23 561 583 561 583 0.99

11 12 1.9e-05 0.0021 19.6 0.7 1 23 589 611 589 611 0.98

12 12 1.2e-05 0.0013 20.2 0.4 1 23 617 640 617 640 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00031	0.033	15.8	1.6	1	23	276	298	276	298	0.98
2	12	0.0017	0.19	13.4	1.3	2	23	306	327	305	327	0.94
3	12	0.87	93	4.9	0.3	1	23	331	353	331	353	0.94
4	12	0.00013	0.014	17.0	0.9	1	23	358	381	358	381	0.98
5	12	0.0061	0.65	11.7	0.2	1	23	385	408	385	408	0.94
6	12	0.0042	0.45	12.2	0.3	2	20	425	443	425	449	0.93
7	12	0.001	0.11	14.2	1.8	3	23	459	480	459	480	0.98
8	12	0.05	5.4	8.8	0.6	2	23	500	522	499	522	0.97
9	12	2.2e-05	0.0024	19.4	1.4	1	23	533	555	533	555	0.97
10	12	2.5e-06	0.00027	22.3	1.4	1	23	561	583	561	583	0.99
11	12	1.9e-05	0.0021	19.6	0.7	1	23	589	611	589	611	0.98
12	12	1.2e-05	0.0013	20.2	0.4	1	23	617	640	617	640	0.98

Sequence Information

Coding Sequence: ATGGAACAGGAAGACTTGAAAGTGTGTCGCATTTGTTCAATAATGGATGTTAAATTACACGATCTGCGATCACACCCATTAGAATCTTATTATGAGTCTGTAATAGGAACCAATCCTCAATACACAAATTTGCCACCATATGCTTGCTATGAATGTGCCGGACTTGTGaggaaattttatttctttagacaGAAATGTCTACGGAGTCAAGCAGTACTACACAGCACTGCAGATGACTTTGGCAAGCTAAAAGCTAAAGAAGTGATATTAATAGACAGAAAAGGCCTCCACATTACTTCTAACCTGGCAATTGTGAAGTTGCCAAAAATAGAGGTATTACTGCCACAAAACCCTGAAATAAATGAGAATATTAAGCTTGAACCAGGCAGTGAAGATGAAGATGATAAGTTTAAAGTTGAAGATCATAATTACACTTCCTTTAATGCAACGGACCACAGTCTTTccagtgatgatgatgaagatgatgaaccTCTATCACTtcataaaaagaagaaaactgAAACTGCCAAGTCAGTTAAGGAGAAGGTTTTCTTAAAACAGGAATTTGAACCtgaaTTTGCTGTGGCCTCTGCACAACCGATTGATATTGAAGCACCTAATGTGgttgaaaagaaaaagaaacatcCACTGAAAAAGCGAGTTGTGAAGAGCAAAAAAGAGACTTCTCTTAAAAAACCTAATTTGTCTAGTGATTTCAAATGGAATGATTTTGCACAGTACATTGATGTTATTACTTTGACGTTAGAAGAGCAGAAAGAAGAGATAGAAAAGCGCAAGGAGTCATCGAACTTTAAAAACTCTCCCTACCAATGTAATCAATGTTATAAAGGGTTCATTGATAATGATGCTTGGAAACATCACGTCAGCAAACACGCTCCGAGCGCGGGCAGCATAGAATGTGAAGTCTGCAAGTTTAGGTTTAAAACCAAGCGCGCCTACCAGAAACATGCGTCCAACCACGAGAAAAAATATGCCTGTAAATCGTGTCCATACATATCTACTAACACGACTCAAGCTAAGCAGCATCAAGGGTGGCATAAAGGAATTACTTTCAAGTGCAAATACTGCGATGAAATCTTTACAATATGGACTTCTTACATGAGTCACGTTCGCATCAAACACCCTTCAGAGTTCATATGCGGTTTCTGTGGGTACTCCTTCATCAGCAAGTTGGGCCTGGCCATGCACAAGACTATGATGCACAAGGATGTCCAAGAGAAAGAGAAAGCAGAAGAGAAGGCAGATGGGCCGTATTGTAAAGAGTGTGACGTGAAGTTCATATCGACGGAGGCGTACAAGAGGCACATGGTGATGTCAGTCAAGCACACAGAAAGTACAGACTCTATTAAAGGCTGCAGGACTTGTGGCGCGACGTTCGAGAATTCCGAAGAGTTACGGCTGCACCATCGTAAGGAACACACGCGGAAGAGACCCAAGAACTACGGGAAGAAACGTTCAAACATGACTTGGCCTTCTAAGTGCGAACATTGTACAGAAGTGATCGCGAACGCGCGCGAGTACTGGACGCACTTCCGGCGCGCGCACCCCGACAAGAACTACCCCATACAGAAGAACCACATCTGCGACATTTGCGGCAAGAGCTTCCGGGGTAACGCCTTCCTCATATACCACAAGCGCACGCACTCCGAGGAGCGAGCGTACAAATGTTCACAATGTGATAAGGCGTTCTTCAACCGAGTCAATTTGAATGTCCACGAGAAAACCCACTCCGACAACAGGCCTTATCCTTGCACCGTCTGCTTCAAAGCTTTCAAGGGGAAAGGAGCGCTCAATAGACATTTTAGAAGCCATACCGGTCAGAAGCCCTACGAATGTGAAGTATGCGGCAAAGGTTTCTCCCAATCGAATAGCAGAAAACTTCACGTCCGGACGGTTCACCTGAAGCAGCCGGCGCCCTACGTGAGCCGCAACCGCCTCGAGCGCCGCAAGCAAGGAGCCAAGGAGCCGCCGCCGCACCAGTTTGTATACTGA
Protein Sequence: MEQEDLKVCRICSIMDVKLHDLRSHPLESYYESVIGTNPQYTNLPPYACYECAGLVRKFYFFRQKCLRSQAVLHSTADDFGKLKAKEVILIDRKGLHITSNLAIVKLPKIEVLLPQNPEINENIKLEPGSEDEDDKFKVEDHNYTSFNATDHSLSSDDDEDDEPLSLHKKKKTETAKSVKEKVFLKQEFEPEFAVASAQPIDIEAPNVVEKKKKHPLKKRVVKSKKETSLKKPNLSSDFKWNDFAQYIDVITLTLEEQKEEIEKRKESSNFKNSPYQCNQCYKGFIDNDAWKHHVSKHAPSAGSIECEVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGITFKCKYCDEIFTIWTSYMSHVRIKHPSEFICGFCGYSFISKLGLAMHKTMMHKDVQEKEKAEEKADGPYCKECDVKFISTEAYKRHMVMSVKHTESTDSIKGCRTCGATFENSEELRLHHRKEHTRKRPKNYGKKRSNMTWPSKCEHCTEVIANAREYWTHFRRAHPDKNYPIQKNHICDICGKSFRGNAFLIYHKRTHSEERAYKCSQCDKAFFNRVNLNVHEKTHSDNRPYPCTVCFKAFKGKGALNRHFRSHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQGAKEPPPHQFVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00121701;
90% Identity: iTF_01230891;
80% Identity: -