Lcom007086.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282463.1:15578408-15600108[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00027 0.029 16.0 0.3 2 23 205 227 204 227 0.95 2 12 1.6 1.7e+02 4.1 0.3 6 23 237 254 235 254 0.92 3 12 0.0016 0.17 13.6 2.6 1 23 289 312 289 312 0.88 4 12 2.8 3e+02 3.3 0.3 5 23 321 339 320 339 0.94 5 12 0.00037 0.039 15.6 0.9 2 23 346 367 345 367 0.96 6 12 3.7e-05 0.004 18.7 3.2 1 23 375 397 375 397 0.97 7 12 0.00011 0.011 17.2 1.1 1 23 406 429 406 429 0.98 8 12 0.00026 0.028 16.0 0.2 1 23 435 457 435 457 0.97 9 12 5.2e-06 0.00055 21.4 3.1 1 23 463 485 463 485 0.98 10 12 0.00046 0.049 15.3 1.0 1 23 490 512 490 512 0.98 11 12 3.5e-06 0.00038 21.9 4.2 1 23 518 540 518 540 0.97 12 12 0.00045 0.048 15.3 1.7 2 23 547 569 546 569 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGAGCTTGAAAGACTTGTGTAGATTATGTGCAAAGAAAGACGAGTTTTCAAAAGATCTATTGGATGAAAGTAATAGAAATGTTCTAAAACTACTACAAGATTTCATACAAATTATTATTTATGAGAACGACAATTTGCCAACGAAGATTTGTTTGAATTGTGAAGAAAAAATGGTGTCATTCCAGCTATTTGTGTTAGAATGTTATAAGGCTCAAGATACACTGAAAAAATTGTATGATGAAAATTATGATTCTCTTGATATCAAACTAGAACAGACACAGGCAGCTGTAGATTTTGGTGTCCCAATAAAATCTGAGGTTAAAGATGAAGTAACAGCAGATGATATAGTCTGTGCATTAAATAATCAGGCAACTTTATCAGTGATAGATGTTTTCCATGATAGTCATAGTGATAATGAAGATGCTGATATCCATAATGGTGatgaagataatgatgatgaagattatCTCGATGACATAGCTATAGCAGAACTTAAGCCTAAACGTAAGCGTATGAGAAGAAAGGATATAACAGAACAGGAGGCAGAAGAGTTTAGACAAATTCTCAAAAAACCTAATTTGAAAGTGAAAGATTTTGTGAAATTGCAGTGCGATTTTTGTGGTGAAAAACTGAAGACATGGAGTGGCTTACGAGTACATTATTCTAAAGAGCATAAGAGTGAACCATTTGTTTACTGTCTGTGTGGTTTTGTAGTACGATCTAAGAGTGTTCTTTACAAACATGTGTCAGATCATAAAatagaaagtagaaaattaaggAAGAATTCAGAAGAATCTGATGATGACGAAAAACAAGAATTTAAATATGAGAGTTTGAATGTGAAAGATTTTATTAGGTTTTTGTGTCCCCACTGTGACAAGGAGTGTTCCAGTTGGTACCGACTGAAAGCACATAGTGAGTATGCTCACAAAGTGTCACCCGTCGTGTCTTGTGTCTGTGGCATCACTCTTAAATCCAAGTCGGTCATGTACAAGCATGTACAAGACCACAGGAATCCCAATGTACTGTCATGTGACAAGTGTCCAAGAATAACTAAAACCCTCTCTGCCTTAAATAAACATAAGATGAGACATATACCAAAATCAGAGAGAAAGTTCTGTTGTTCTTCATGTGATAAGATATTTACTTCTAAGGATGCATTGAAATCTCACGAAAGGTCACACATCCCAATAGAGGAGCGGAAAATATATCGTTGTGATATATGCAACATGAAGTTCACGACTCGGTCGTCGGCGTCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGCGACCTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTCTGCAGGAAGTGCGCCAAACGtttCAAGACTTATTCAAACCTCAAGACGCACATGGACACGCACGAGGATACGTCTTACGAGTGCTACATTTGTCGACGAGTGCTGAACAGTCGCCGAACACTGCGCAAACATCTGCTGGTGCACGAAGACAAATGTAGGCATGTTTGCTCGTACTGCAACAAAGCGTTCAAGAGGAGACAAACTTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGTCGTGCGCGTGGTGCGACGAGCGCTTCTCGTACGCgtccacgctgcgctcgcaccGCCTGCGCTGCCACGCCGACCAGCTGGCCGCGCGCTCAAGGGCCTGCCCCGCCTACGATGTGCAAGAGgattACATCAAGAATGACGTGGCGCCTGTAAATGTTCCAGTAGCAAAGAATGAAGTTGAGGCTATGTAA
- Protein Sequence
- MAMSLKDLCRLCAKKDEFSKDLLDESNRNVLKLLQDFIQIIIYENDNLPTKICLNCEEKMVSFQLFVLECYKAQDTLKKLYDENYDSLDIKLEQTQAAVDFGVPIKSEVKDEVTADDIVCALNNQATLSVIDVFHDSHSDNEDADIHNGDEDNDDEDYLDDIAIAELKPKRKRMRRKDITEQEAEEFRQILKKPNLKVKDFVKLQCDFCGEKLKTWSGLRVHYSKEHKSEPFVYCLCGFVVRSKSVLYKHVSDHKIESRKLRKNSEESDDDEKQEFKYESLNVKDFIRFLCPHCDKECSSWYRLKAHSEYAHKVSPVVSCVCGITLKSKSVMYKHVQDHRNPNVLSCDKCPRITKTLSALNKHKMRHIPKSERKFCCSSCDKIFTSKDALKSHERSHIPIEERKIYRCDICNMKFTTRSSASSHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCAKRFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCAWCDERFSYASTLRSHRLRCHADQLAARSRACPAYDVQEDYIKNDVAPVNVPVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029509;
- 90% Identity
- iTF_00851039;
- 80% Identity
- -