Lcom007509.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282463.1:26073471-26082462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3e-06 0.00025 22.5 0.9 2 23 155 176 154 176 0.98 2 9 1.5e-06 0.00016 23.1 1.6 2 23 184 205 183 205 0.98 3 9 0.00037 0.04 15.5 0.4 1 23 211 233 211 233 0.98 4 9 3.5e-06 0.00037 21.9 2.8 1 23 239 261 239 261 0.97 5 9 3.7e-07 4e-05 25.0 0.4 1 23 267 289 267 289 0.98 6 9 5.1e-05 0.0055 18.2 0.3 3 23 297 317 295 317 0.97 7 9 1.5e-06 0.00016 23.1 3.2 1 23 323 345 323 345 0.99 8 9 9.8e-05 0.01 17.4 0.8 3 23 353 373 351 373 0.97 9 9 5.9e-05 0.0063 18.1 2.9 1 23 379 401 379 401 0.97
Sequence Information
- Coding Sequence
- ATGTCGAGTGTTTTTGATTTCAAAAAGATTTGCCGTACTTGCTTATCGGACGCCGGGCCCATGAAAAATTTGTTCACGGTTTGCACATCAGAGATGTTTAAATTTTGTACGTCTGTTGAGgTGGAAGAAGGGGACAATCTACCTCACCAAATATGTCAATCATGTCTGGATATGCTAAACAAGTCATATTATTTCAAACAAGCTGCTGTGCGCTCCAATCTTATTTTAAAACAGCAGATTTTAGATGAGCAAGAACCAGTAAAAGCTGAGCATCATCCAAATAATCAAGAGATTCTTGAAATAAATGTGGCTGAGATCACAGCTGAAGACATGCTTAGTCAGACTGAGAACCCACCTAACAGTGAGACATTGGCAGACCGTTCTATGGATCCTGCTGAAATTATTAGGAGAATAAGAAAACGGAGGGAACTAGTAAAGCATCTCAAAAAAAGAACAAGAATGAAGTGTCCCAAATGTGAGAAATCATTTCAGAAGTATGAAAACTTTGAAGCACACATGAGGATTCATTTTGGTAAAAAGCCCGACATAAAATGTCAGTACTGTGACAAGGCATTCCCAACCGTCCGCAATCTTCACAGCCACATCCGCACTCACACGGGCGTCCGTAAATATCAATGTTTGACTTGTGGCAAGAACTTTGCATACTTGAATGTTCTGAAGAATCATGAGATGATACATGCGGGCATTAAAAAACATGTCTGTCATATATGTGATGCGAGGTTCGTGCAAAGTTATAATTTGAAGaccCACTTAGAAACACATAGTAATCAAAAGAACTACATTTGTGGACAATGTGGCAAAAAGTTTGCACAACAAGGCAACCTCAAGACTCACTTGATAAGGCACACGGGTATCAAAAACATAGCCTGCCAGGTGTGTGATATGAGGTTCTATATCAAGGGTGATCTCTTCAAACACATGCGGTCTCATTCTTCAGAGAAACCATATTCGTGCCCATACTGTGATAAGAAGTTCAAAAGCCAGAGTTTTAAAGTGCAGCACATGAGAACTCACACAGGCGAACGCCCATACGGCTGCGACCTCTGTCCCAAACGATTCATGTCACGTAAAGACTTGAGGAACCACAGAATGATACACACAGGTGAAAAGCCCCACAAATGTGTGCTGTGCGACCAAGCCTTTATACAGAAATGTGCTCTGAATAGGCACATGAAAGGACACATGCAGAAGGATGCCGAGAATGCGGATAAACCGCAGAATATATTACTAAGGGCTAGGTTACAAGGGAGCGTGGCAGAGTACTCGCAGTGGAATACTGATGTCTGA
- Protein Sequence
- MSSVFDFKKICRTCLSDAGPMKNLFTVCTSEMFKFCTSVEVEEGDNLPHQICQSCLDMLNKSYYFKQAAVRSNLILKQQILDEQEPVKAEHHPNNQEILEINVAEITAEDMLSQTENPPNSETLADRSMDPAEIIRRIRKRRELVKHLKKRTRMKCPKCEKSFQKYENFEAHMRIHFGKKPDIKCQYCDKAFPTVRNLHSHIRTHTGVRKYQCLTCGKNFAYLNVLKNHEMIHAGIKKHVCHICDARFVQSYNLKTHLETHSNQKNYICGQCGKKFAQQGNLKTHLIRHTGIKNIACQVCDMRFYIKGDLFKHMRSHSSEKPYSCPYCDKKFKSQSFKVQHMRTHTGERPYGCDLCPKRFMSRKDLRNHRMIHTGEKPHKCVLCDQAFIQKCALNRHMKGHMQKDAENADKPQNILLRARLQGSVAEYSQWNTDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952061;
- 90% Identity
- iTF_01527585;
- 80% Identity
- -