Lcom007989.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282464.1:5482898-5496352[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00064 0.069 14.8 1.3 1 23 202 224 202 224 0.97 2 29 0.00068 0.073 14.7 0.8 2 20 253 271 252 273 0.92 3 29 0.00021 0.023 16.3 0.1 2 23 304 326 303 326 0.96 4 29 5e-05 0.0053 18.3 0.7 1 23 376 399 376 399 0.96 5 29 0.033 3.6 9.4 0.4 1 23 418 440 418 440 0.95 6 29 0.00024 0.026 16.1 3.3 1 23 478 501 478 501 0.95 7 29 0.002 0.21 13.3 4.1 2 23 542 564 542 564 0.97 8 29 0.0025 0.27 12.9 0.6 1 23 614 637 614 637 0.97 9 29 0.0045 0.49 12.1 0.2 1 23 690 712 690 712 0.97 10 29 0.0012 0.13 14.0 5.4 1 23 723 745 723 745 0.98 11 29 0.025 2.7 9.8 0.4 2 23 757 778 756 778 0.96 12 29 0.0033 0.36 12.5 1.4 1 23 788 810 788 810 0.98 13 29 1.8 2e+02 3.9 7.3 1 23 839 861 839 861 0.94 14 29 0.0036 0.39 12.4 2.8 1 23 872 894 872 894 0.97 15 29 1e-05 0.0011 20.4 0.5 1 23 902 924 902 924 0.98 16 29 0.00077 0.083 14.5 0.2 2 23 944 966 943 966 0.97 17 29 1.2 1.3e+02 4.5 0.3 1 23 984 1006 984 1006 0.90 18 29 0.032 3.4 9.5 3.7 1 23 1013 1035 1013 1035 0.97 19 29 0.0035 0.37 12.5 3.0 2 23 1046 1068 1045 1068 0.95 20 29 0.017 1.8 10.3 0.2 2 23 1091 1112 1090 1112 0.95 21 29 1.5 1.6e+02 4.2 3.6 2 23 1155 1177 1154 1177 0.95 22 29 0.0027 0.29 12.8 0.2 2 23 1193 1214 1192 1214 0.95 23 29 0.14 15 7.4 4.8 3 23 1222 1242 1220 1242 0.96 24 29 0.016 1.7 10.4 0.8 2 23 1253 1275 1252 1275 0.95 25 29 0.22 23 6.8 3.3 2 23 1292 1310 1292 1310 0.90 26 29 0.92 98 4.9 1.9 2 21 1314 1333 1313 1334 0.93 27 29 0.22 24 6.8 0.8 2 23 1383 1404 1382 1404 0.94 28 29 0.00094 0.1 14.3 0.4 2 23 1415 1437 1414 1437 0.96 29 29 4.4 4.7e+02 2.7 0.8 2 23 1453 1471 1453 1471 0.78
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTCGGCGACTTTTACTCCATCTTCACGATCGACAATGCTTTACAGCTCGCGGAGATGGCAATGGAATGCGCCAGGGTGAAAATATACGAAGGCGATGGGCTGCCTGACAAGGTGTGCTCTGAGTGCATACAGAAGCTCAGCAGCGCACATATCTTCAAGCAGCAGTGCGAGCGTGCCGACCAGGAACTACGCCGCAACTACGTGCCTCCACCTGGATTCAGTATCAGTCCGCCACCACCAAACAGACAGAGCAGCGATTCCGCCTTTTCAAACCATACCGACACCTCCAACTTAACCAAACCTCCATCTTTCATCGAAGAAAAAGTAACCCCCGCAACTAGAACCCGAAAGCGTAGTGCGGATAGCGTTGACAATGCATCTACTGGAGGTGCCTCCAGCGACTACAGGCCCAGCGGCTCCAAACGCGTCGAGGAACTCAGGCGCAGCCACAAAAAACCTAGGAGACTTTCAGGACACGTCTCGCAGTTAGATTCAGATTACGAAGACAACAGCGCCTCGTACTTAGCTGAAACAGATTCCGACGAGCCCTTACTTAAAAATAGCTTCAATTGTGACATATGCCATAAACAATTCCCATCCCAAAGAAGTCTGGGTGTCCACAGCAGGGTGCACGACAAAAAAGAAAGTCTAGGCGAAAACGCCGTCGTTGATATACCGCAGCAGACGGAGGACGCGGCTGACGTTGAGGACAAACTGAACTGTGAAAAATGTGGCAAAACCTTCAAATTAAAGATCATGTTGAAACGTCACCACGAAATATGCGAAAAGCCGGCAAGTCCCGTCAAGATTCCACAAAAAGAGTTGCTCATCTCTCTGGAACCGATCGATGGCATGAAGAACCGGAATATTGTGTGCGAAATGTGCTCTGCCAAGTTCAAGTCGGTTGACAATTTGGCTAAGCACATGAAGGTGGTTCATGCTGCCGTCTTAAAAAGAGAAAATCTTGATAAACGGGAAAATGGGAAGGTGTCAGTTCCATGTATGTTCTGCAGGAAACTGTTCGAAGATTGCTATACTCATAATGCACATTTCCACAAGTGTCCGAAAAGGGACGACTCTTTGCCATTTGAGTGCCCCATTTGTAAGAAGGTAATCACGAGAAAAAGCAATTATATGCTACATCTTAAGAATTTGCATTTTGAGCCTCGGACGTCACTGAAGAGCTCAGTGGAGCCTGAGGCGCAGGAATACCATGAATGTAGGATGTGCTCGAAGAAGCTTCCCTCTCAAGAACTGCTGATCACGCACTTAGCAGCACACATGTCCAACATCGATGATATCGACCGTGAAGCTGACAATGAATctagGACAAGCACTATAGACGACGGAGTGTCCATTCAATCAGTACATAGCCAGACTCCCACCGCTCAGTTTAAATGTCCAACATGTGACAAAGAATTTAAGTACAGGAAAGCTCTTCAAACGCATGAGGCTAGGTGCCATTCTGAAGTACCTGTGCAAGTGAAGATAGAGCCACCTGATAAGCCGTCGACGAGTCTTCTAAGTGAGTCAGCAGTCTATAGGCAGACTGACTCAGAGTCTAGTCAGGAAGAAGACGATAATACGTGTGATATTTGCGAGAAACAGTTCTCTTATCGCCGGCTGCTGTTACACCACAAGAGAACTAAACACAACATGAGTTCAGGACATAAACGCGCCAAAATCTACCTCAAAAACTGCTCGGTACGCTGCCTCATCTGCGACCTCGACATGAAAGTCGGAGCAATCAACGAACATAATCAAACCCATATTTCAAAAAATATGAAACCTAGAAACCTGTACACCTGCGCTGAGTGCGAGGATACCTTTAAGAGCTGTTCTGCTCTTGCAAACCATATAAAATTGATTCACAGACTAAAACAGAAGCGGATCGAAGAGGATACCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACTTTATCCAGAGTCACAACGACTTTGGCGAGGTTCCGGGCGAAAGCAAGCCGCTGGTAGATCTTAGCGGCTTCACCTGTCCCATATGTAGCAAGAAGATGCCGACCCTCATATCCTTGAAGAGGCACGTCAACTGGCACACCAATGTAGGAAATAATGTGGAGAAGAAATACGAGTGTAGCGTCTGTAAAGAGGCCTTCAAGTTTCAGTGCCATTACAAGATCCACATGCGCGAGCACTACCACGACACCAACCTGGACCCGAAGCACCTGACGTGCGCCATCTGCGGCCGCGTCAGCAAGCACCTCCGCGCCGCGCAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCGAGCGAGTCTTCCAGCACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAAAAAGGCGACAGCGTGCAGAACACCATCGTGGGCGACGTCATGCCCGGCAACGTCGACAGGAGCATCTTTGACGGCACGCACACCTGTCACCTCTGTGGCAAAGTCTGTGATTCAGAAAATTCTCTCAAATGCCATCTCAGCTGGCACAACTCCAAAACATTCCTATACGGCGCCCGCCATGAGTGCACCATCTGCAAAGTGAAATTCACTAACAAACGAAGACTAGAACTTCACACCCGAGCTCACTTCGAAGACGAGAATGGTCCCTACAAATGCAATATTTGTGGCAAGGGGTACACTGACGAAGGCTACTTCCAAAGACATGTTAAAGGACACAACTTTGACCATCAGTCCCACAAAAAAAGGATCGAAAAATTCAGAAAGGATAAAGTTAAATGTCCAATATGCTCACGTTACTACCCTGACTTGGTGAAGCTGATCCGACACTTGCGCCGCACGCACCCCGAGAGCAAGATGATCAAGGCCGACCCcgacgcgccgccgccgctctACTACTCCTGCAAGCTGTGCGCCAAAGTATTTCTAGACGAGCGGAGACTGCAGTCTCACGAGGAAGCTCATTTACGAAAACCAGAGTTCTTTAAATGCAAGTTTTGTGGAAAGAAGTACATATCGCTGAAAAACCACACGATCCACATTAAGGGTCACTTGGCGCAGAAACATTACGACAATCCTTTAAAGTGCCCGCACTGCGACGAAAGGTTCGTGAAGGGCTACGCGCTGCACCACCACTTGCGCGACGCGCACAACATCAACGAGAGCTGGATCGCCGAGCGCACGGAGCAGCCGCTCTCTGGTCCGCTGAAGGACCTGCAATGCTCCATCTGTATGAAGGTCCTCGCCAGCAAAGGGAACTACGAGCGACACATCGACTACCACAATTCTTTGAGATGTAACTACTGCTTCGATTACTTCAGTTCTCTCAGGTTCCTAGAGGGACATCTGCAGTTCGCGTGCAAAAAGAAAAAGCTATTAGGTGATACCGAAGTTTACCCTAAAAAAGTGAAATGCAACATTTGTTACAAAGCGTTCCATGTACAAGTGAAACTAGACTGTCACCTGCGCACGCAGCACGGAATCATAGTAGACAGGGAACAGAGAAGTGGCAAGCAGGAAATTGTCTGTGATTATTGCTTCAAAGTTTTCGAAAACGAGTATGCCTTAAGCACTCACAAGATTTACCATCGCACTATTGGCTACTATGGTTGCAAGTACTGCAAAAAGAAGTTTAACACGCTGGTTGTGTATCGGAAACACAAGAATCACCATATGGCGCAGCTCAATGTAGATAACCCGACGAAATGCGAACATTGTGACGAAACATTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTACACGGAGATGACAAGGAGTGGTTCACTGAGCCCAAGGAGTCCATCGAGGAGACCTGCCCCATCTGTAATAAACGATTTTATAATCTTCACAAGCATTTAACTTACCATGAAGAAAACAAGTGCAAGAAATGCAGTGAATATTTCTACTCCAGAGCGGATTTCGATAGTCATCTCTGCGCTATTGAAAGTGACGACGAAGGTACGGCGTATGTGGGAAGTGAAGGAACATTCCAATATGAAGAGTGCAAGTTCTGCTTCAAACCGATCACCAAGAAGAGCACCAAGCGGCTCCACGACCAGATCCACAAGGGCTCTGGCTCCATATCCTGCAGGTTCTGCTCACTTAAGTTTAAAACTTTAGACGCTTTTAACATACACGCTTTCTCTCATAGAAGCAGAAAATACAATAAGAAACCGATAAAATGTAGGAAATGCGGCGAGAAGTTCGTAAGATACGGACCGTTTATAAAGCACATGAAGTTAGTTCATAAGTCTGTGAAGAAACTCCATTACAGAGCGGTAGTGAAGCCGGAGAAATGTGTCGTTTGTGGAGAAGACTTCCCGAACTTGCATAATCATTACCGCGCGCATCTGCTGAACCAGTGTCAGGCTTGTCTCAAATACTTCACGTCGTACAAGGTGATATCTGCGCACGAGTGCGACAAAGAGGACTCGGACCCGTCGAAGGTTTTCACATGCGACGCGAACTTAAATGAGCTGATAAAAACATATGTTCCTATGGATGAGAAAGATGATGAGAAGTACTACGGCCACACCGACAACgaagaagatgaagaagaagaCGATATTATGCCGCAAGTGGTTGGTGAAGAAGAGGAAAGTCAGGACAGTAAAGAGTATAAGGATATGCCTACGCTGCAGTCGCCAATAATATCAGATGTGCTGTCGCTATTCAAGGCGGAGATGAATGGGATGGGTGAGGTTGATGGCGTGGTGGACAACATGGCTGAGGTGGTTAACATAACAGATGATGACTCTGTGGATGTGGATGATACCGTTGTGCCAGTTGTTGTCGTTATAGATGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTIDNALQLAEMAMECARVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSNHTDTSNLTKPPSFIEEKVTPATRTRKRSADSVDNASTGGASSDYRPSGSKRVEELRRSHKKPRRLSGHVSQLDSDYEDNSASYLAETDSDEPLLKNSFNCDICHKQFPSQRSLGVHSRVHDKKESLGENAVVDIPQQTEDAADVEDKLNCEKCGKTFKLKIMLKRHHEICEKPASPVKIPQKELLISLEPIDGMKNRNIVCEMCSAKFKSVDNLAKHMKVVHAAVLKRENLDKRENGKVSVPCMFCRKLFEDCYTHNAHFHKCPKRDDSLPFECPICKKVITRKSNYMLHLKNLHFEPRTSLKSSVEPEAQEYHECRMCSKKLPSQELLITHLAAHMSNIDDIDREADNESRTSTIDDGVSIQSVHSQTPTAQFKCPTCDKEFKYRKALQTHEARCHSEVPVQVKIEPPDKPSTSLLSESAVYRQTDSESSQEEDDNTCDICEKQFSYRRLLLHHKRTKHNMSSGHKRAKIYLKNCSVRCLICDLDMKVGAINEHNQTHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLKQKRIEEDTVNPSDFCEVVVTKAEPLDFIQSHNDFGEVPGESKPLVDLSGFTCPICSKKMPTLISLKRHVNWHTNVGNNVEKKYECSVCKEAFKFQCHYKIHMREHYHDTNLDPKHLTCAICGRVSKHLRAAQAHMNFHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVQNTIVGDVMPGNVDRSIFDGTHTCHLCGKVCDSENSLKCHLSWHNSKTFLYGARHECTICKVKFTNKRRLELHTRAHFEDENGPYKCNICGKGYTDEGYFQRHVKGHNFDHQSHKKRIEKFRKDKVKCPICSRYYPDLVKLIRHLRRTHPESKMIKADPDAPPPLYYSCKLCAKVFLDERRLQSHEEAHLRKPEFFKCKFCGKKYISLKNHTIHIKGHLAQKHYDNPLKCPHCDERFVKGYALHHHLRDAHNINESWIAERTEQPLSGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLQFACKKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDREQRSGKQEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCKYCKKKFNTLVVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHLTYHEENKCKKCSEYFYSRADFDSHLCAIESDDEGTAYVGSEGTFQYEECKFCFKPITKKSTKRLHDQIHKGSGSISCRFCSLKFKTLDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVRYGPFIKHMKLVHKSVKKLHYRAVVKPEKCVVCGEDFPNLHNHYRAHLLNQCQACLKYFTSYKVISAHECDKEDSDPSKVFTCDANLNELIKTYVPMDEKDDEKYYGHTDNEEDEEEDDIMPQVVGEEEESQDSKEYKDMPTLQSPIISDVLSLFKAEMNGMGEVDGVVDNMAEVVNITDDDSVDVDDTVVPVVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_01026588;
- 80% Identity
- -