Lcom014103.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282469.1:9368425-9377760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.33 12.6 6.5 1 23 82 105 82 105 0.98 2 12 0.00057 0.061 15.0 1.2 1 23 112 134 112 134 0.97 3 12 2.6e-05 0.0027 19.2 0.5 2 23 141 162 140 162 0.97 4 12 3.1e-06 0.00033 22.1 0.3 1 23 168 190 168 190 0.98 5 12 9.4e-06 0.001 20.6 0.6 1 23 199 221 199 221 0.96 6 12 3.3e-05 0.0035 18.8 1.4 2 23 228 249 227 249 0.96 7 12 0.00055 0.059 15.0 7.5 1 23 255 277 255 277 0.98 8 12 1.6e-09 1.8e-07 32.4 0.6 1 23 283 305 283 305 0.99 9 12 2.4e-05 0.0026 19.3 1.7 1 23 311 333 311 333 0.98 10 12 1.1e-06 0.00012 23.5 1.5 1 23 339 360 339 360 0.98 11 12 8.7e-05 0.0093 17.5 1.3 1 23 366 388 366 388 0.98 12 12 0.0064 0.68 11.7 2.4 1 23 394 416 394 416 0.97
Sequence Information
- Coding Sequence
- ATGCCATTTGACAGTGCTTCACCTCTGCAGGGTCCCAGTGCATTGCGATTCTTGTCCAGAGaTGTACAATATTTAGAAGATCTCAGTGATATCAGTGATAGTGGTAACCTTTGTGTTGTAACAAAACCAAAGAGTAGAATTAAGTATGTTGACGaggataatgataataattatgAATCTAAAGGCCTTCTAAAGCCTTTGaataagaaactaaaaaaaaaacatggaaataaagaaaatacatttaCGTGCAAGACTTGTTTTAagAAATTCCAAAATGCTAAATCATTCCATGCCCATATGAAGAGCAAGCATCCAAACTGCCAGCAACTATATTCTTGCAACCAGTGTACGGAATCATTCAACTCGGACCATGATCTCAAAGTGCATGCATCTATACACAGTAAAGGAAACACTTGGAAATGCAATCAATGCCCAAAGGAATTTAGTGCCCGCGCGATGCTCCGTCGGCACATCTCAAGGCACATGGAGTCTAAACGCTTCTCATGCGAAGTGTGCAGCAAGGCGTTCACCGAACAGTACGCCCTTAGGAGACATGCTCGCGTTCACACCGGCGAGATAATTGAGAAGAAACACGCTTGCACTATGTGCGATAAGAGGTACAGTGACAGCGGTCTCCTGGCCGCGCACATGTCTCGCCACATCGGGCTGCGTCCTTGCGAGTGCAGTATCTGCGGCAAACGGTTTCCATCGAACCGTTTATTATCTTCACACCGGCTCGTCCACTCAGATCGCAAGCCGTACGCCTGCCAGTACTGCGATAAACGTTTCCGCCACGAGTCGACGCGCAACACGCATCACCGTACACACACCGGAGAGAAGCCTTACGTGTGCTCAGTTTGTGGCAAGAGTTTCATTCAGAATTCCAACCTCACGTTACATATGAGGACACATACAGGCGAGCGCCCCTACTCATGTTCGACATGTGATCGCAAGTTCACATCAGGCTCCACACTCAAGACCCACGAACGGATACACTCTGGGGAACGACCTTTCAGCTGTGAAATGTGTGGGAAAAGTTTCTCGCGTAAGAACTTGAGTGCACACATGCGCAAGCACACGGGCGAGCGACCTTACGAGTGCGGCGTCTGCTCCAAGAAGTTTGCCAACGCGACGCGCCTCCGGGATCATCATCGCGTACATACGGgCGAAAAACCATTTGATTGCTCTTTGTGCACGTTAAAATTCGCAACGAAATCCCAGCAGTTAAAACATTCCAAAACTCATCTAAAAAAGAAGAGAGCACACCAACCAGCTTCAGATAAAGACAGAGACCGGGATAAGCGCGAACTAATCATATTACAGCATGTTGAGTCCGTACCTGTCATTACTGATAGGATTATGTTTAATAAAGAACACGGTGAACTAATAACAGTCAATGAAAATGTACTTGCCAACGAGTCGCCCGAAGAGGAATCCAAAGAATTGACTCTAAACATTGCTCAAGAAGTCCCGTTAGATGTAACGGGAGAGTTAGTACTTCACGACGATAGCAACATAAAAACAGAACTTTTAGTAGTGGATAACAGCCAAATGAATAACTTCCAAAGTGATAATATATGCTTAAATACTAACAACGTGAATATCATTAACGACGGGAATTTCGACGGTGATATGAACTTGGTGACAGTGAACGAGGGCGGAGTTAGCATTTCGACCGCGAACCTCGAAGGAACTACAGTGAAACTATACCAGTTAGACCAAAGTTTAGTGCAAATACACAGCTCCGGCGGACAAGTCACTATTAGTAAGATCACTAGCAAAATGACAGCTAACTTTTag
- Protein Sequence
- MPFDSASPLQGPSALRFLSRDVQYLEDLSDISDSGNLCVVTKPKSRIKYVDEDNDNNYESKGLLKPLNKKLKKKHGNKENTFTCKTCFKKFQNAKSFHAHMKSKHPNCQQLYSCNQCTESFNSDHDLKVHASIHSKGNTWKCNQCPKEFSARAMLRRHISRHMESKRFSCEVCSKAFTEQYALRRHARVHTGEIIEKKHACTMCDKRYSDSGLLAAHMSRHIGLRPCECSICGKRFPSNRLLSSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKSFIQNSNLTLHMRTHTGERPYSCSTCDRKFTSGSTLKTHERIHSGERPFSCEMCGKSFSRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHHRVHTGEKPFDCSLCTLKFATKSQQLKHSKTHLKKKRAHQPASDKDRDRDKRELIILQHVESVPVITDRIMFNKEHGELITVNENVLANESPEEESKELTLNIAQEVPLDVTGELVLHDDSNIKTELLVVDNSQMNNFQSDNICLNTNNVNIINDGNFDGDMNLVTVNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028534;
- 90% Identity
- iTF_01028534;
- 80% Identity
- -