Lcom036741.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282492.1:6693692-6698665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.028 3 9.6 1.6 1 23 128 151 128 151 0.95 2 19 0.68 73 5.3 0.1 2 23 176 198 175 198 0.93 3 19 0.11 12 7.7 0.1 1 23 222 244 222 244 0.93 4 19 0.00012 0.013 17.0 0.2 1 23 248 270 248 270 0.98 5 19 0.00098 0.11 14.2 0.5 1 23 275 298 275 298 0.96 6 19 0.0093 1 11.1 0.4 2 23 305 327 305 327 0.93 7 19 0.089 9.5 8.1 6.5 1 23 334 357 334 357 0.96 8 19 7e-05 0.0075 17.8 4.7 2 23 364 385 363 385 0.96 9 19 0.0019 0.2 13.3 1.7 1 23 391 413 391 413 0.97 10 19 0.014 1.5 10.6 0.2 1 23 560 583 560 583 0.95 11 19 0.0016 0.17 13.5 0.4 2 23 609 630 608 630 0.96 12 19 0.011 1.2 10.9 0.3 1 23 652 674 652 674 0.98 13 19 2.6e-05 0.0028 19.2 0.1 1 23 678 700 678 700 0.98 14 19 0.0038 0.41 12.3 1.0 1 23 705 728 705 728 0.93 15 19 5.9e-05 0.0063 18.1 0.5 2 23 735 757 735 757 0.97 16 19 3.2e-05 0.0034 18.9 0.3 1 23 764 787 764 787 0.98 17 19 0.0059 0.63 11.8 4.7 1 23 793 815 793 815 0.97 18 19 2.8e-07 3e-05 25.4 0.6 1 23 821 843 821 843 0.99 19 19 0.074 8 8.3 0.4 3 23 848 869 847 869 0.96
Sequence Information
- Coding Sequence
- ATGAAGACTACTACAATTGCTATTTCTGTTTTTCTAGGATCGGACTTCGACATACCAGAAGTGAAGCGAAGAATCATCCCGTTATTCCAAGTATCTTACGACAGGAGTCTATGTAGACCTCTGGGGACATTAATAGATTTTAGTAAACTCCGACAGAAGACTGTTAGACCCATCTCTCCAACTCCAACATTAAATTCCTCTACGTCTCGTAGTCCATCTCCTGGTTACCTAGAGAATTCACCAAAGCCTGTTGATAGCCCGCCGACATTAACCGTCCAAACAGTAAAGCCGAAAACTGTGAAAACTCCAGATATTAGACAAAATGCCCTAGCTGTGTTTGAATTTTCAACGGTCTACCCATTTATTTATGGGAGCAacaaattcaaatgtttcatTTGCTCCCAGCCGTTTCTGGACTTAAAGGAACTAAAAGTGCACATGCACTTGTCCCATAACTTCGCTCCACTCAAGAGACTTGTGAATAATCGAAGAGAGAACGTACTTAAAGTGGATGTTAGTGATATAACTTGCAAGATATGCTTAGAAAAACCTCCTAGTCTTGTGGAACTCAAGCGCCATCTCAAAGTGATACACGACAAGCCAATGGATTTAGAACTCCAGGACAATATGATCCCGTTCAATCTAGAACTCATAGACGATGCTTACAGATGCGTTATATGCGACCAGAGGTTCATAAAAGTGCGAATTTTAGTCATACACATGAGCGAACACTTTAATAACTACAGTTGTGAAATTTGCGGATCAGTATTTATGACTTTAAGGCTATTAAAGAAGCATTTAGAAGTCCATGATTCCGGAAACTTTCCTTGTGATCGATGTAGTAAAATTTTTAGTACTCCTTATAAACGGACCTTACACATTAGAGGGGTGCATCTCAAGCAATGTCCTAGAAGATGCCCGATGTGTCCGGAAAAATTCAACTCGAATTATAAAAGGACGATACACTTGCAAGATGTCCATAATCAGGAAACGAGGGTCCATAAATGCAAGACTTGCGGCCGTGGGTTTAATTTGAAATATCATTTGGTCTGTCATGTACGTTCGGTCCATCTGCAGGAGAGGAATCAGCAATGTGATGTGTGTCACCAAAGATTTTGTAACAAGGAGTCTTTGAAGCGTCATATGGTGATACATACAGGAGAAAAGAACCATAAGTGCGATGTTTGTGGGGCGGCGTTTTTAAGGAGGAAGAATTTGAAGGATCATTTCCGTTTGCATGATATTAgattcatCCAGAAATCAAACTCAACGATCACTCTGAAAGAAGAAGATGGAACAGAAATTAAACTAACAGTTCTCAAATACCCAATAGCTTTGAATACTCTAGAATATGAAGCTGATGAGTTTGTTGCAAACAATAAATTTAAGAGCAAAGGGAAAAAGAAAATCTGCAAAAAGAAAGAGGTGATGAGCGACATTAAGCTAGGAAATATATCTTTATTGAAAGAACCGATTTCCATAAATAATATCGATTGGAAAAGCGATACTAATGAACAAGAAAATTCTGTAACTTTCAATGTTAAAACTGTTCAAAGGTTTATCCGTGCGCCAACAAGACAACGAAATGAAAATGTTGAGTATGAAAAATGGAAACAAAATGCTTTGACGATCTTTGAAAATTCTTATGTCTATCCTTTTATTCATGCTGCTAATAAATACAAATGTTTTATCTGTGCTAAGCCTTTTCTCGACGCTAGCCTGTTAAAAGTCCATACTGTAAAGGAACACACAAGCAAAGAAATGAAACGAACGTTAAATAATAGAGTCAGAGAGAATAACCTCAAAGTTGATGTTACATATCTCCAGTGCAAAATCTGTTTGCAATCACTACCTGATCTTCAGAACTTGAAAAGGCATCTGAAAGAGCACGGCAAGAAAATAAAGCCGGAATTGCAAGATAATATAATACCATTCAAACTAGGAGGCGAAGATTTTGAATGCCAAATATGTGGAGAAAAGTATCTTAAACTAAGACTCTTAATAATCCACATGAGTAAACATTTCAACAATTACAGCTGTGAAATATGCGGATCCGTATTCATATCGTTGAATTTACTAAAACGGCATTTACAGATTCACGAATCAGGAAGCTTTCCTTGCGTCAAATGTGATAAAGTATTCACAACTTCTACAAAAAGGTCTCTTCACTACAAAGGAGTGCATCTTAAGCAGTTTCCGCGAAGATGTCCAATTTGTCCCGAAAGATTCAACTCTAATTATCAACGGACCAAACATTTACGAATAGCACATAACCAATCAACTGGGATATATAGATGTGACACTTGCGGACGAGAATATGACTTGAAATACAATCTCCTTGTACACATTCGGTCTGTTCATCTTCAAGAAAGAAATCATGAGTGCCCAATGTGCAGTTCAAGATTTTTCTCCAAATATTGTCTTTCAAGACATATGATTATACATTCAGGGGAGAAGAATTTTAAGTGTGAGGTTTGCGGGAAGGCGTATGCGAGGAAGAAGAACCTTCGAGAACATTGGAGGTCCCACGATGTTGGGCTGTGTGCTATTTGTGGACTAAATTGTGGGGATCATAATAATCTTGTCGCTCATGTTAACAGCGCGCATTGA
- Protein Sequence
- MKTTTIAISVFLGSDFDIPEVKRRIIPLFQVSYDRSLCRPLGTLIDFSKLRQKTVRPISPTPTLNSSTSRSPSPGYLENSPKPVDSPPTLTVQTVKPKTVKTPDIRQNALAVFEFSTVYPFIYGSNKFKCFICSQPFLDLKELKVHMHLSHNFAPLKRLVNNRRENVLKVDVSDITCKICLEKPPSLVELKRHLKVIHDKPMDLELQDNMIPFNLELIDDAYRCVICDQRFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCSKIFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGAAFLRRKNLKDHFRLHDIRFIQKSNSTITLKEEDGTEIKLTVLKYPIALNTLEYEADEFVANNKFKSKGKKKICKKKEVMSDIKLGNISLLKEPISINNIDWKSDTNEQENSVTFNVKTVQRFIRAPTRQRNENVEYEKWKQNALTIFENSYVYPFIHAANKYKCFICAKPFLDASLLKVHTVKEHTSKEMKRTLNNRVRENNLKVDVTYLQCKICLQSLPDLQNLKRHLKEHGKKIKPELQDNIIPFKLGGEDFECQICGEKYLKLRLLIIHMSKHFNNYSCEICGSVFISLNLLKRHLQIHESGSFPCVKCDKVFTTSTKRSLHYKGVHLKQFPRRCPICPERFNSNYQRTKHLRIAHNQSTGIYRCDTCGREYDLKYNLLVHIRSVHLQERNHECPMCSSRFFSKYCLSRHMIIHSGEKNFKCEVCGKAYARKKNLREHWRSHDVGLCAICGLNCGDHNNLVAHVNSAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192954;
- 90% Identity
- -
- 80% Identity
- -