Lcom029364.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leucania comma
Gene Symbol
-
Assembly
GCA_958295575.1
Location
OY282482.1:16073038-16087674[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.9e-05 0.002 19.6 4.3 2 23 192 213 191 213 0.97
2 13 7.8e-07 8.4e-05 24.0 0.2 3 23 227 247 226 247 0.98
3 13 7.8e-05 0.0083 17.7 2.0 2 23 256 277 256 277 0.98
4 13 0.00031 0.034 15.8 1.5 3 23 285 305 283 305 0.95
5 13 7.1e-06 0.00076 20.9 1.4 1 23 311 333 311 333 0.98
6 13 1.4e-05 0.0014 20.1 8.5 2 23 340 361 339 361 0.97
7 13 2.5e-05 0.0027 19.2 0.8 1 23 367 389 367 389 0.98
8 13 1.9e-06 0.0002 22.8 1.1 1 23 395 417 395 417 0.99
9 13 0.0013 0.13 13.9 2.3 1 23 423 445 423 445 0.97
10 13 0.00034 0.036 15.7 2.1 1 23 451 473 451 473 0.98
11 13 2.1e-06 0.00022 22.6 0.7 1 23 479 501 479 501 0.98
12 13 7.3e-07 7.8e-05 24.1 0.4 1 23 507 529 507 529 0.99
13 13 0.00029 0.031 15.9 2.5 1 23 603 625 603 625 0.98

Sequence Information

Coding Sequence
ATGGCTGCTCCGAATAAACCTTTGAAATTCGACAAAATATGTCGCGCTTGTTTAGAGATAAAAAAGGATATGAGACCCCTATTTGAACAACTTACAGCGACAATGTTGATGGGCATATCGAAAGTGCAGGTGGCTGTTGGCGACGGTCTTCCCTCCCAGCTGTGTCTGCAATGCGTGCACCAGATCTCGCGGTGCCATGCCTTCAAGGATCTGGTCGAGAGGAATGACGTCACGCTACGGGAGCACGCCGCGCGGATGGCGGAGGAGGCTTATAAGAGAGATAGGGAAGAGAAAGAGAAGCTGCTAACCTTGAACTGCACGGAACCTTACATGCAATACATGGAGGTGCCTCTATCCAACACGAGTCAGATCCTGGACGGGTTCTTCACGGCCACTCCTGACCAGCCGCCCGCGGACAACCCTACGACGGAACTGAAACAGGACTTCGATGTGGAAAAGCTGGACTCAGAACTTGTCCAAATGAAAGACAAAGAAGGTCTAAACTCGGACGAAGAGAACTATCTTCAACTGGTCCTGTTCCAAGCGACCTCCACGGTGTCTCCCGGGCGTCTCGTCTGCAACCTCTGCCATAAGGAGTTCAAGCATGCGCGCTGGCTAAAACAGCATATGCGATCCCACACGAACTGGATCAAGGCGAATTGTAAGAAGCCCCCCATGTGCCCGATATGCGATAGGACTTTTAAGGGCCCGGGCATGCTTAAAATGCACATGCGCACCCACGAACAGCGTCCAGCCAAGCAGCCAACTTGCTCAGTCTGCCAACGAACGTTCCCCAGCAAGACGCTACTGTACCGCCACAGACAGACGCACTTTGAACAGAAGACGCACCTGTGCTCTGTGTGCGACAAGAGGTTCTACAGCGGCTATGCCTTGCGCTCGCATATGGCGCGCCATCGCGGAGAAAGGCCCTACGTGTGCTCCACGTGCAACAAGAGCTTCTATAATCCTACCGATCTGAAGgtTCATTTCCGCCTGCACACCGGCGAGAAGCCGTTGAAGTGTAACGAGTGTAACAAGACGTTCAGACGACACTCGACCTTATGCCAACACATGAAAAAGCACCGCGGCATCCGCAACCACGTGTGCACGGTATGCAACAAGGGGTTCTACGAGGTGTCCAAGCTGAATGCGCATATGAGGGTGCATACAGGCGAACGTCCGTATGAATGTCAGTACTGCGAGCGCCGTTTCGCCCAGCAGTCAGCCCTGATCTACCACCGGCGCACGCACACCGGCGAGAAGCCCTACTGCTGCAAGATCTGTTCTGCGCGCTTCACGACTTCGTCAGCCAGGAACAATCACATAGTCACGCATACTGGCAACAAGAGGTTCGTCTGTCCAATCTGCTTCAAAGGCTGCACATCGCGCACAGAACTGCGCGTGCACACCAGCAAGCATACTGGAGAGAAGTTGTTCGAGTGCAACCAGTGCGGACAGAGGTTCAGCTCGGCCTCCTACCTCGCCGTGCATCGCCGCTACCACACCGGCGAGAAGAAATACCAGTGTCCTGTCTGTGGGAAGGGTTATATAGAATCAAGTTCTTACAAGAAACACATAAAGACGCACGCCAACAAGCCTGAGACGGAGTCGTCAGCGTGCGACAACACTGGCGACGCCGCGCAGGGGAAGGAACCCTGCCTCAGTGAGCACCAGACTGTCACGGTCACTGAGGACCTGCCTGACGCGCCCAATCAAGTCCAAGGCCAGGTGCAGGTagcggcgggcgcgggcgcgggcgcgggcgcggggggGGCGGAGCGCGCGCCGCAGCAGAAGGTGACGCGCTACAAGTGCGCGCTGTGCGTCAAGACCTACATGTACCTGCACAACCTGAAGAAACACATGCTGGTGCATGAACAAGAGAATGGCCGTAACACGGAGCCAATAATATTCTTGCAACAGCAGCAACCACAGCAACAGCAGCAGCAACaacaacagcagcagcagcaacaacaacaacaacaacagcagcagcagcaacaacaacaacaacagcagcAGCAACAGCAACAACAACGCCAGCAACAACAAGTACAACAACAGCAGCACCAACAGCAACAGATGCAACATCAAGTCCAGCAACAAGTGCAACAGCAGGTGCAACACCACCAGCAACAGCAACAGTTACAGCAACAGGCGGTGCTGCAGGTCGGCAACGTGCAACAGCTTGCCGTGCCCATACATGCGCAACATGTTCAACAAGGGATCACTGTGTCTGGAGTACAGAGTCAGCACCCGTACCCGGTGATCTCGTCGGTGCAGTCGCTGCAGCTGCAGCAAACACAACAGGtaaaattttttctttgtctaaATCTCGCAAAAATAACTGCATCATGCACGAACTTATTTAAGGTTGAACTAGGCGCGGGCTCGAATTCTCAGATGGCCGAAGTCCGAATGCGTGCCGTCTCATTTGACGTGGTGTCCGACAGAGATAGTATCACTGATGAGCAATTAACCCTTAATAGGGCATGGGCAAACTGTgggtgtttgaaaaaaaaacgcagtCAATTTGGCATTATGGGTGTATAG
Protein Sequence
MAAPNKPLKFDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPSQLCLQCVHQISRCHAFKDLVERNDVTLREHAARMAEEAYKRDREEKEKLLTLNCTEPYMQYMEVPLSNTSQILDGFFTATPDQPPADNPTTELKQDFDVEKLDSELVQMKDKEGLNSDEENYLQLVLFQATSTVSPGRLVCNLCHKEFKHARWLKQHMRSHTNWIKANCKKPPMCPICDRTFKGPGMLKMHMRTHEQRPAKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHLCSVCDKRFYSGYALRSHMARHRGERPYVCSTCNKSFYNPTDLKVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPYECQYCERRFAQQSALIYHRRTHTGEKPYCCKICSARFTTSSARNNHIVTHTGNKRFVCPICFKGCTSRTELRVHTSKHTGEKLFECNQCGQRFSSASYLAVHRRYHTGEKKYQCPVCGKGYIESSSYKKHIKTHANKPETESSACDNTGDAAQGKEPCLSEHQTVTVTEDLPDAPNQVQGQVQVAAGAGAGAGAGGAERAPQQKVTRYKCALCVKTYMYLHNLKKHMLVHEQENGRNTEPIIFLQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQVQQQQHQQQQMQHQVQQQVQQQVQHHQQQQQLQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQSQHPYPVISSVQSLQLQQTQQVKFFLCLNLAKITASCTNLFKVELGAGSNSQMAEVRMRAVSFDVVSDRDSITDEQLTLNRAWANCGCLKKKRSQFGIMGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01094252;
90% Identity
iTF_00906378;
80% Identity
-