Basic Information

Insect: Leucania comma
Gene Symbol: F52H2.6
Assembly: GCA_958295575.1
Location: OY282488.1:7396377-7402186[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-07 0.00011 23.0 0.0 1 44 18 61 18 62 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-07	0.00011	23.0	0.0	1	44	18	61	18	62	0.89

Sequence Information

Coding Sequence: ATGCCGCGGGATTATAAAAGAAGACCAGGAACCAGAGCGTACAAAAATTATACAGATGAAACTCTTCAAGCTATATTAGAAGAGATTAAATCGGGGCGTATTTCAGTTCGTGGCGCAGCCGAGAAGTATGGGATTCACCGCAATACGTTATCTTCGAAACTGAAAGGCAAAGCGCCTTTAAAACCTGGAGGACAACCTGTATTCAGTGAAACAGAAGAACAAGGGTTTATATCCCACATTGTTGCGTTGTCTTCGTTCGGATTCCCGATTACACCAACGGAATTACGTGTCATTGCAAAAACGTATTTAGACAAGAAGGGTAAAAAAGTTAACGCTTTCGTTAACAATTATCCTGGAAAAGAATGGGTCTACTCCTTTTTGAAACGCCATAAATCTCTTCTGTCTCATAGAGTGGCCAGAAATATTACTCATGGCCGAGCAGAGGTAAATGAAACTATTGTCAACGAATTTTTCgacaacttcgaaaaggagacTGAAGGCGTGCCAGAAACAAATATCTGGAACTATGATGAAACTTGTCTAGTAGACGACCCTGGTTCAGTAAAGGTTTTGGTGAGGCGTGGGACCAAATATCCCGAGATTATACGAAACTCATCGAAAGCGTCGACATCAATAATGATATGTGGTAGCGCAGCAGGAGAACTGGCACCTGTCTACGTTGTTTACAAAGCTGAAAACATGTGGGAAACTTGGACTGAAAACGGGCCCCAAGGAGCTCGTTACAACCGTACTAAATCGGGCTGGTTTGACGCTAGGTGTTTTGAAGACTGGTTTCATTTTACGATGTTACCAATTTTAAAGAAACAAACCGGTAAAAAAGTATTAGTGGGCGATAATCTGAGCTCACATATTAATCTGGAAGTCATGGCTGAATGCGAGGCCAATGACATTGCATTCATTTGCCTTCCTCCGAATGCAACGCACTTACTGCAACCTTTAGATGTTGCATATTTTCGCCCAATGAAAATTGCGTGGAGAAATACGCTAAATGAATGGAAGAATAACGTCCGCGGTAGTAGGAGCTCTTCTGTGCCAAAAGATCAATTCCCCGGGCTTTTGAAGGAAATGTTTCAAAAGATGGAAACAAATTCATCACAAAACCTGAAATCAGGATTTAAGAAATGTGGTTTGTTTCCACATAATAGAGATGAAGTTTTACAAAGATTGCCGAATCGACAACTGGAAGATAATGTACCAGTCCAAGAATTATTAGGTGAGAGTTTCATAGAAAATTTGAAATCTACAAGGCTGCAAGTCACTGAAACAAGACAATGCCGAAGAAGAAAGCGGGTCAATGTTCCGGCAGGACGAAGCATAACTACTGCAGATTTACAACACGATATAGAAGTTCCACATGCGCCATCAACTCCTATTTTTGATGAAAGATCAGATGCTGAGTATGACGCTACTTCACCGGTGGAGAGAGCTGCTCGTACTGACTGCTCAACTCCAGTGCAACCATACTCACATGAATGTCCATTTATCTCGTTTAGTACTCATGAAGCCTCCCCAACTCAATGCAGTTATGATCCAACCTCAGATCTAGCGGTGAAGAGAGCTGAACGTAGTGACTGCTCAACTCCGACGCAGCCTTATTTACAAATTTCTACCTCACCAACTCCTCAATGCAGTAGTTATGCCGTCAATAAAACAACTGAAGCCAGGAGAGCCGAAGAATCAGAGATTATTTGGGAGCCTCAACCATCAACGTCTAAATCATCAACAGCAATGCTAATTAATAAGCGaaataaatcaacaaaaaagGAAAGCGATCACAGTTTGAATTGGTGTGATTTAGAACATTCAGATAAAGAAAATGACGCGAATAACACAAGTACAGAGATGGGATtcgaagaaaataaaatggatcTTACAAACTTAAAGGAAGGAAGTTATGTACAAGTCGAATATGAGAATAACATTTACCCTGGAAAAgaTATAATCCCCTTCGGCAACAACCCGATATTCCGCTACCTCCTCGGCTGGCTGATGCCGCCCGAGGTCTCGCTGCTGAAGCTGACGCAACCAGAGGCCGTCGCCAAGCTGTACGACAAGGCTCACGTGATCCAGGACATGCTGGTGCCTGTTGAACATCTGGAGAAGAGTATCGAGGTATTCCATAAGGAGATAGAGGTATACCCGATCTGGCTGTGTCCCTTCAAAGTGTTCAACCACCCTGGTCAGCTGAAGATCAAGACTAAAGCCGATTGGCAGATGTTCGTCGATGTCGGCGTCTATGGGGTGCCGAAAGCTAAAGGATATGAAACTGTACCGTCAACCCGCGCCATCGAGGCGTTCGTGTCCCAACACGACGGCTTCCAGATGTTGTACGCAGACACGTACACCACGCACGACGAGTTCCGACGCATGTTCGACCACACGCTGTACGACATAGTGAGGGACGCTCTCCCTCACTGCAAGGAAGCCTTCCCCGAAATCTACGGGAAGGTCAATAGGAGCgttaggaaataa
Protein Sequence: MPRDYKRRPGTRAYKNYTDETLQAILEEIKSGRISVRGAAEKYGIHRNTLSSKLKGKAPLKPGGQPVFSETEEQGFISHIVALSSFGFPITPTELRVIAKTYLDKKGKKVNAFVNNYPGKEWVYSFLKRHKSLLSHRVARNITHGRAEVNETIVNEFFDNFEKETEGVPETNIWNYDETCLVDDPGSVKVLVRRGTKYPEIIRNSSKASTSIMICGSAAGELAPVYVVYKAENMWETWTENGPQGARYNRTKSGWFDARCFEDWFHFTMLPILKKQTGKKVLVGDNLSSHINLEVMAECEANDIAFICLPPNATHLLQPLDVAYFRPMKIAWRNTLNEWKNNVRGSRSSSVPKDQFPGLLKEMFQKMETNSSQNLKSGFKKCGLFPHNRDEVLQRLPNRQLEDNVPVQELLGESFIENLKSTRLQVTETRQCRRRKRVNVPAGRSITTADLQHDIEVPHAPSTPIFDERSDAEYDATSPVERAARTDCSTPVQPYSHECPFISFSTHEASPTQCSYDPTSDLAVKRAERSDCSTPTQPYLQISTSPTPQCSSYAVNKTTEARRAEESEIIWEPQPSTSKSSTAMLINKRNKSTKKESDHSLNWCDLEHSDKENDANNTSTEMGFEENKMDLTNLKEGSYVQVEYENNIYPGKDIIPFGNNPIFRYLLGWLMPPEVSLLKLTQPEAVAKLYDKAHVIQDMLVPVEHLEKSIEVFHKEIEVYPIWLCPFKVFNHPGQLKIKTKADWQMFVDVGVYGVPKAKGYETVPSTRAIEAFVSQHDGFQMLYADTYTTHDEFRRMFDHTLYDIVRDALPHCKEAFPEIYGKVNRSVRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00888203; iTF_00888204; iTF_00888205; iTF_00888206; iTF_00888207; iTF_00888208; iTF_00888209; iTF_00147385; iTF_00147386;
90% Identity: -
80% Identity: -