Lcom019084.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282473.1:19821674-19822075[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-08 4.2e-05 24.3 0.0 2 39 17 54 16 60 0.87
Sequence Information
- Coding Sequence
- atgaaaacgacaaaagataatattcaagaaaaaagaaaaaaatataacgaagAGGACGTAGTAAATGCGATAAATGCAGTTAAGTCTGGCATGAGCAGAAAAAATGCAGCCAAACTGTTTCAAGTACCAAAATCAGCAATTCAGATTCGGTTTAACAATTCAGACAAAACTAGTCAACGTCCAGGCCAAACTACAATTTTAACACCTGAAGAAGAAACTTCGCTAGTCAACTGGATAATGAACACCTCAAAAAAGGGACTTCCAAGGTCCAAAGAGTATATTGAATCCAGTGTTACCGAATTTTTAAGAAAtaccaaaagaaaaaattattttaaaaatgatcaaccAGGGAAAAAGTGGATGAAACTCTTCTTGAAGAGACATCCTGAGATTGCGATCTGA
- Protein Sequence
- MKTTKDNIQEKRKKYNEEDVVNAINAVKSGMSRKNAAKLFQVPKSAIQIRFNNSDKTSQRPGQTTILTPEEETSLVNWIMNTSKKGLPRSKEYIESSVTEFLRNTKRKNYFKNDQPGKKWMKLFLKRHPEIAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026109;
- 90% Identity
- iTF_01026109;
- 80% Identity
- -