Lcom032146.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282485.1:13443559-13444059[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-08 1.7e-05 25.6 0.0 1 40 18 58 18 63 0.85 2 2 9 5.2e+03 -1.6 0.0 15 22 130 137 123 137 0.72
Sequence Information
- Coding Sequence
- ATGCCAAATGAATACAAAAGAAAACCTTCTGGCTCTAATAGAGCTACGTGGAGTGAAGAAGACTTGGAAAAAGCCATTACTCTAGTAAAAGataaatctttaattttttttcaagcaAGTAAAGAATACAATATTCCTTACAGAACTCTTCGTCGTCGATTTCTCATAGGCAATACTAAAAAAGGACGACTTGGACCTGACTCTCTGTTtggaaacaaagaaaaaaagattGTTAATCATATTAAGAAGTTGCAAAGCCGTGGATTTGCACCTACTGTTAATGATTTACGCCAGTTGGCTTTTAAATTTGCTGAAAGCTTAAACCTTCAACATAATTTTAACAAGGATTTTTTACGTAGAAATCCTGAAGTTTCATTAAGGAAGTCGGAAGGAGTGTCTCTACAAAGAGCTAAAGGAATGACACCAGAGGAAGTTTATactttttttgatttattggaGTCACTATTTCAGGAACATAATTTTAATAGTAATTCAAATTAA
- Protein Sequence
- MPNEYKRKPSGSNRATWSEEDLEKAITLVKDKSLIFFQASKEYNIPYRTLRRRFLIGNTKKGRLGPDSLFGNKEKKIVNHIKKLQSRGFAPTVNDLRQLAFKFAESLNLQHNFNKDFLRRNPEVSLRKSEGVSLQRAKGMTPEEVYTFFDLLESLFQEHNFNSNSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00122323;
- 90% Identity
- -
- 80% Identity
- -