Lcom017585.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282472.1:7555672-7556932[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-11 8.8e-09 36.1 0.0 2 37 16 51 15 56 0.94
Sequence Information
- Coding Sequence
- atggTTCGCACGTACAAAAGGAAGACTGATGCCGGAGAATGGTCTCAAGAAAAAATGAAAGAGGCTGTAAATAAAGTCCAGAACAAAGAGTTGACCTTACGTAAGGCTGCTGAGATTTTTGCAGTACCGTTCACGAGCTTACAGAGAAGAGTAACTTTGTCCAAGGGTGTTATTAAGCGTCGAGGTGGACAGCCAGCTTTAGGAATCACAAAAGTCGCTTTTGGAGCACTTTTCCAACGGGCTTGGAATCAGGCTGCCACTGTTGGGAATGCTACAAAAGGCTTCGAAAAGACTGGAATATTTCCACTAAATGCCAATGCAATACCTGACCACAAGTTCATCGGTGATCAAGAGTCCGACATTGTAGAGTCCCAAGTCCAGTCCCCAAGTTCCCAACAAATGCAGCTACAAGGGCAAGCCACAAATACACAACCAGTAGCTGATACAGTGTCATCTGCAAGTTCACGACAGTCTGAAAAAGCCCAGTCTTCCACCTGTGCagatgaagaaagaaagaagataaagaataaagaaacgCCTGGGCTAAAAATTAAGAGTTCATCAGCAAAACAGAGAGAGTGTCAAGTGCCCCAAGTCCAATCCACGAGTTCTCAACAGGTGCAGCCACAAGACCAATCCTCAAGTGCAGCACAGGTGCAGTCAAAAATAAAGGTACAAGTCCAAGCCACAAATACAAAACCACTTGATAATATGGTGCCATCCACAAGTTCGCAAAAATTTGACGAAGCCCAGCCTCCCACCTGTGcagaaataattaaagaaattctTCCATCACCTTCGAAGTCAGCAATTGCTTCAAAAAGAATTCGTAAAGTTTTAAAACCGGTCTTGCATTTAACATCACCTCAGAGTAAGACTACTCTTCTCGAAAAAGAAACCAAGAAGAAATTTAAGGTAGACAATAAAACCAAGGAAAATAAGAAAAAGGCTGTGGGCAAAGAAAATACTAtgaagaagatgaagaagaaaGCAAAGCCTGCGATAAAAATTAAGAGTTTATCTGCAAAAAAGAGAGAGTGGCACTGCATTTACTGTTCCGAAATATTCGTTCATCCACCATCAGAGGACTGGATTCAGTGCAATGTCTGCGAAGAATGGTGTCACGAAAAATGTGCTGATATGGGGGGGAAAAAAGGACCATATGTATGTGAATTATGTGCCGGTAATCAAAATTGA
- Protein Sequence
- MVRTYKRKTDAGEWSQEKMKEAVNKVQNKELTLRKAAEIFAVPFTSLQRRVTLSKGVIKRRGGQPALGITKVAFGALFQRAWNQAATVGNATKGFEKTGIFPLNANAIPDHKFIGDQESDIVESQVQSPSSQQMQLQGQATNTQPVADTVSSASSRQSEKAQSSTCADEERKKIKNKETPGLKIKSSSAKQRECQVPQVQSTSSQQVQPQDQSSSAAQVQSKIKVQVQATNTKPLDNMVPSTSSQKFDEAQPPTCAEIIKEILPSPSKSAIASKRIRKVLKPVLHLTSPQSKTTLLEKETKKKFKVDNKTKENKKKAVGKENTMKKMKKKAKPAIKIKSLSAKKREWHCIYCSEIFVHPPSEDWIQCNVCEEWCHEKCADMGGKKGPYVCELCAGNQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888168;
- 90% Identity
- iTF_00888168; iTF_00888172; iTF_00888183;
- 80% Identity
- -