Lcom023857.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282477.1:19695561-19696886[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-13 2.2e-10 41.3 0.1 1 39 13 51 13 56 0.93
Sequence Information
- Coding Sequence
- ATGGAGCCTTCTACTAAAAAACGGCGCGGGGAATGGACAGAAACACAGTTGAAATCTGCCCTTCAAGCAGTAAAAAGCTGCCAAATGTCACAGCGAAAAGCTGCTGAAACATATGGCATACCAAGGCGAACATTAAGAAATCACATAGAATCTGGTTCCATGGAGAAGATAACTGGTCGTGTCCCTATTCTTAATAAATCACAAGAAAAGGATTTATGCAAAAGGATAATTAGACTGTCTCAGATAGGAATGCCATTAACTCCGAAAATTGTTCGGAAGCAGGCTTACGAATTTTGTAAAGCGAATAATGTATCGAATGATTTTAGTGATAAAAAGAATATTGCTGGAAAAAAATGGCTCACAAATTTTGTGAAACGCAATCCAGAAATATCGCTTCGAAGGGCTCAATTGTTAAATCCCGCCAGAGCACAAAAACTCAACAAGCCAATAGTTTCAAAACATTTTGAAGCCCTAAAAAACATTTACGATGAGTTAAATATTTCCACCCACCCGGAACGCCTTTATAACATGGACGAAAAGGGATGTCGTCTAACACTACACCACCAACAGAAGGTTTTTGCAGCAAAAGGGACCAAGAGAGTGCACTTTGTCAGTCAAGAACATGCAGAAAATGTCACAGTCGCTATGTGTGTAAGTGCAACGGCCAACACTGTGCCACCTATGATTCTATTTAAGGGCAAAAGGTTGAGACCAGaattttgtgataatttacCACCTGGTAGTTTAGTCAAAATGGCTCCAAAAGGCAGTATGATGACCGAACTTTTTGTTGATTTCATACACCACTTAGGACAGAATAAATCTCCAGGAAAATGCCTACTAATTTTTGATGGGGCCTCCTCACATTTAGACGCAAGAATCGTTGATGCTGCTGATGCCCATGATATTGTACTCTATTGCTTACCTTCAAATACGACTCATGAGCTTCAACCGCTAGACAAATCGGTTAATAAGTCGTTCGAACATTTTTGGGACGAGGAGGTTTTGTTGTATGCATATCAGCATCCAGAACGTGAACTAACTAAAGCTCGTTTTacaaaaatttttacaaaagtTTGGTCTAAGTGCATGACCAAGGACAATATAATCAGTGGGTTTAGAGCTACCGGCCTTTTCCCGTACGATCCCAGCGCAATTCCTGAAGAAGCGTATGCACCTTCAGTACTTACACAAATGCCCGATCCACAGGTGGCAAATTCCTCAAAAATGCATCATTCAGTTTCTAATTCATCACCTTCAAGAGATTCTATTCCCGGAAGTCCTGTTATGTACCCAAGGTGCGACAATCATTCGGATGAAAATTGA
- Protein Sequence
- MEPSTKKRRGEWTETQLKSALQAVKSCQMSQRKAAETYGIPRRTLRNHIESGSMEKITGRVPILNKSQEKDLCKRIIRLSQIGMPLTPKIVRKQAYEFCKANNVSNDFSDKKNIAGKKWLTNFVKRNPEISLRRAQLLNPARAQKLNKPIVSKHFEALKNIYDELNISTHPERLYNMDEKGCRLTLHHQQKVFAAKGTKRVHFVSQEHAENVTVAMCVSATANTVPPMILFKGKRLRPEFCDNLPPGSLVKMAPKGSMMTELFVDFIHHLGQNKSPGKCLLIFDGASSHLDARIVDAADAHDIVLYCLPSNTTHELQPLDKSVNKSFEHFWDEEVLLYAYQHPERELTKARFTKIFTKVWSKCMTKDNIISGFRATGLFPYDPSAIPEEAYAPSVLTQMPDPQVANSSKMHHSVSNSSPSRDSIPGSPVMYPRCDNHSDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00040715;
- 90% Identity
- iTF_00889112;
- 80% Identity
- -