Lcom019120.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282473.1:20562544-20569121[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-11 5e-08 33.7 0.1 1 40 3 42 3 47 0.91 2 2 1e-05 0.0059 17.5 0.0 1 28 62 88 62 89 0.95
Sequence Information
- Coding Sequence
- ATGTGGACAGAAGAAGACCTAAGAGCTGCTATGGAAGCTTGCACAAAAGGGAATCTATCACAGTATGCTGCTGCAGCTGTCTATGGAATCCCTAGACAAACACTCCGAGATCATTTGAAAATAGGAAGCTCAGAAAAACgGTCTAATGAATTCAGTTCGACGCAAGCAAAACAAGCTTTGTGGACTGAAGAAGATTTAAAAGCTGCTGTGTCAGCTGTTAGAAATGGTGAAACAACACATACAGCATCAAACCTCTATGgTATCTATCAACCCGAAAAAGTATTCATTTCATCTACCGTCACAAAAGCCACCCCAAAAAACACCCGTCATATTGAGGTTGAAGTACAACCCTCTGTACACATTCAGAAAATCACTGATGCTagtcaaattgaaaaatatctaaaactgattttagaAAATCAATATAGCATGGcacaaacaataaatttattagcaGGCAATCAAATAAAACGGGCAGATATGGTTACATTGAGGGAGTCTAACTCGTTTGACAATGAAGCTTTTACTGTGAAACCTATTAATTCTATTAATGAGCTTGAGTCATTGGACTCATTTTTATCGGAcgaaaagcaaaattttaaactcATAAAGCAATATTCCTTTGTATGTTCTCTATCGGATGGAAACGGTACAACATGTGCCTACAAAGTATTGGATATGTTTTTTACTCGAGAATTCTTATGCAAATGTTCGTGGACAGGTGGTAGCAGGAAGACCGGCGAAGTAAAAATTGGACTAAAGAAATATACAAACTTTCTCAATTTTTTCTATGATTTGATACGTGTCTGGGATAAAACTTTTACCATGGAAGACAATGAAATCTTTTTCAAGATTGTCTTGAAAAATGCCATGCAAAGAAAACTAAGTAAGAATGAAAGAGCTTCAACCAAACGAAGAAGAAACAAAGCAGttgcacttaaaaataaaaatccaggCGCGAATCAACATAAAAGTACAATTGATGATAACGCTACAAACGATATTGATATAGACATAGAAGAAGAAGAGGAGAATGTAGCTGAAAGCGTTTCGGAACAAGGAAATCCAGACACAGATCAAAATAAAATGGATGCAAATGAAGGAATCTATACATTATCAGCTTCTGAACTTTAA
- Protein Sequence
- MWTEEDLRAAMEACTKGNLSQYAAAAVYGIPRQTLRDHLKIGSSEKRSNEFSSTQAKQALWTEEDLKAAVSAVRNGETTHTASNLYGIYQPEKVFISSTVTKATPKNTRHIEVEVQPSVHIQKITDASQIEKYLKLILENQYSMAQTINLLAGNQIKRADMVTLRESNSFDNEAFTVKPINSINELESLDSFLSDEKQNFKLIKQYSFVCSLSDGNGTTCAYKVLDMFFTREFLCKCSWTGGSRKTGEVKIGLKKYTNFLNFFYDLIRVWDKTFTMEDNEIFFKIVLKNAMQRKLSKNERASTKRRRNKAVALKNKNPGANQHKSTIDDNATNDIDIDIEEEEENVAESVSEQGNPDTDQNKMDANEGIYTLSASEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -