Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.28 1.6e+02 3.2 0.0 11 23 3 15 2 19 0.86

2 3 1.9e-08 1.1e-05 26.2 0.0 2 39 32 69 31 74 0.89

3 3 3.5e-09 2.1e-06 28.5 0.0 1 42 87 128 87 130 0.91

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.28	1.6e+02	3.2	11	23	3	15	2	19	0.86
2	3	1.9e-08	1.1e-05	26.2	2	39	32	69	31	74	0.89
3	3	3.5e-09	2.1e-06	28.5	1	42	87	128	87	130	0.91

Coding Sequence: ATGATAGCCGTTACTGAGGGACATATGTCACAGAGAGCTGCAGGTTCTTTTAAATTTGGCAAGAACAAAGTATCCAGAAGAGCAAAGTGGTCAGAAGAAGGCTTACAAGCTGCTATGAAAGCCGTTACTGGAAAACATATGAAACTAAAAGCCGCATCAAAACGATATGGGATCCCAGAGACTACCCTCCGGGAACATTTGAAGTCAGGAAGTCCTTTTAAATTTGACACGAACAAAGTGGTCAGAAGAGCAAAGTGGTCAGAAGAAAACTTACAAGCTGCTATGACAGCCGTTAATGGAAAACATATGAAACTAATCGCCGCATCAAAACGATATGGGATCCCACAAACTACCCTCTGGGAACATTTGAAGTTTGGAAACATGGTTCGGGGCGTTCTACACGAGCAATGTGGACAGAAGAAGACTTACAAGCTGCAATGGCAGATGTTAGACAAGGGAACTTATCTCGACATGCTGCAGCAAGACGATATGGAATTCCCAGAACCACTCTCAGAAACCATTTAA
Protein Sequence: MIAVTEGHMSQRAAGSFKFGKNKVSRRAKWSEEGLQAAMKAVTGKHMKLKAASKRYGIPETTLREHLKSGSPFKFDTNKVVRRAKWSEENLQAAMTAVNGKHMKLIAASKRYGIPQTTLWEHLKFGNMVRGVLHEQCGQKKTYKLQWQMLDKGTYLDMLQQDDMEFPEPLSETI

Sequence clustering based on sequence similarity using MMseqs2