Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold549:314677-317592[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0062 0.38 11.2 3.8 1 23 251 273 251 273 0.97

2 10 5.4 3.3e+02 2.0 0.1 3 23 303 324 301 324 0.92

3 10 0.0096 0.59 10.6 0.1 5 23 349 367 345 367 0.91

4 10 6.6e-06 0.00041 20.6 1.7 1 23 371 393 371 393 0.98

5 10 0.0012 0.073 13.5 1.3 1 23 402 425 402 425 0.93

6 10 0.35 22 5.7 1.4 1 23 431 454 431 454 0.94

7 10 6.2e-06 0.00038 20.7 1.0 1 23 460 483 460 483 0.98

8 10 7.4e-05 0.0046 17.3 1.3 1 23 489 511 489 511 0.98

9 10 2.8e-07 1.7e-05 24.9 1.1 1 23 517 539 517 539 0.99

10 10 0.00012 0.0073 16.7 2.2 1 23 545 568 545 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0062	0.38	11.2	3.8	1	23	251	273	251	273	0.97
2	10	5.4	3.3e+02	2.0	0.1	3	23	303	324	301	324	0.92
3	10	0.0096	0.59	10.6	0.1	5	23	349	367	345	367	0.91
4	10	6.6e-06	0.00041	20.6	1.7	1	23	371	393	371	393	0.98
5	10	0.0012	0.073	13.5	1.3	1	23	402	425	402	425	0.93
6	10	0.35	22	5.7	1.4	1	23	431	454	431	454	0.94
7	10	6.2e-06	0.00038	20.7	1.0	1	23	460	483	460	483	0.98
8	10	7.4e-05	0.0046	17.3	1.3	1	23	489	511	489	511	0.98
9	10	2.8e-07	1.7e-05	24.9	1.1	1	23	517	539	517	539	0.99
10	10	0.00012	0.0073	16.7	2.2	1	23	545	568	545	568	0.98

Sequence Information

Coding Sequence: ATGAGCATAGGCAATAAAAAAGGTCCTGTATTTGAGTCGGGCGAGTGCAGATGTTGTGGAGCAACGAAAAGATGCCGATTACTTAACGTGGAATACGAATTTATGGGGCATAAGGAAGTGTATTCTGATATGTTTGTCGATTGCTTTGGTCTAATGCTTTCACACTTAGACGGAGGGGAGTCAGAGCGTATGATATGCGCTACTTGTGTAATGAGACTCAGAGAGGCAAGAGACTTCCGTAGCCAGGTGCTGCAGTGTGAGGAGAAACTGCTTCGAGCCAATATCTTTGTTGGTGACAACAGTCACCCCAACATCAAAGTTGAGATAGAAATAGACCTCAAGGAACTGGCTGAGCAGGACAACAATAATTATGAAGATACACAGGATATAGATAGTCACATTGCTGATGATCCCGTTGAAGATAAGAGCATTACACAGTCACCGGAACCCAAAATAAGAGAACTGCCGCAGAAAAAAATTAAAAAGTCGTCAAAAAAAACAATGAAAACATCTGAGGGTAAACGAAGTATGAAATCTACTGTTAAGGAGCACATCAAAGCTAGGAAAGAAATGCTTATAAGTATGAAGAGGACAAAAGAAAAGTTGAAAAAAACACTCAGGAAAGAAAAAACAACAGAAATAGTGCGGCTTGAAGGCAATAGGATACAAAAGAGTACAAAAGCATTCTCCAATACTGTGACCATAGTTGAAAATTCCTATGTGTGCCCCTTCCAATCAATCTTTAATGATTTCTACTGTGATTACTGCAGGGAAAAATTTGTAGATCACCAGAAACTTAGAGAACATTATGTGAAACATGACCCGGCCACTTTTAAAGATGCTATTATGGATAGCATGCGAAGACTCGGTCGGAAGAAGACTCAATTAGACATTCAAAGGATAGACTGTAGACTTTGCCCGCAGCAAATTAATGACATAGAAACATTTAAAGAACACTTAACAAGTGTGCACGGAAAGATCCTATATCCAGTTGAGAATGAATTCCTTCAATTCAGGGTTATACCGAATAACTTAGCATGTATTGAGTGCGGTCAAACGTTTCCTTTGTTTCAATCCTTAAAAAAACACATGGCTGAACACTTTGGGACGTACACATGTGATATTTGTGGGACTCACTTCTTCAATGAAAGCTACCTGATAGCTCATCAGAAGAACCATGACCCAAATAGCAAGCCAGAGCTCTATACTTGCGAGGAATGCGGAAGATCCTTCAAGTTGAAATACAGTAGAGACATGCATGTCACTACGCAACATAGAAAAGAGGCAGCCTTTCAGTGTATTAAATGCGATGGCATGTTCTTTTCAAGTAGACAGCGGTTTAAGCATATGATGGAGGTACACGGTGAACGATCAACGTTCCAATGTAGTCAATGTGACCGCGTGTATGACAGCAGAAAGACTTTATTAGACCACATGAGACGAATTCATGTGAAGATGTTGAAACATAAGTGTAGTATGTGTGAACGAAGGTTTTATCTCCCATCTATGTTGAAAGACCACATGGCTATTCACACTGGAGAAAAGAATTATAAGTGCGATTATTGTGGCAAAAGTTATCCTCGGCTGAAGTCGTTGAAAGTACATTTGCAATCCCATGCGGCTGTCAAGAAATATAAATGTGCGCACTGTAGTGCCTCGTATGGACAGAATGTTAGTTTAAAAAATCATATGAAGCGCACACATCAGCATGGGTTGGAGGAAGGTGTATAA
Protein Sequence: MSIGNKKGPVFESGECRCCGATKRCRLLNVEYEFMGHKEVYSDMFVDCFGLMLSHLDGGESERMICATCVMRLREARDFRSQVLQCEEKLLRANIFVGDNSHPNIKVEIEIDLKELAEQDNNNYEDTQDIDSHIADDPVEDKSITQSPEPKIRELPQKKIKKSSKKTMKTSEGKRSMKSTVKEHIKARKEMLISMKRTKEKLKKTLRKEKTTEIVRLEGNRIQKSTKAFSNTVTIVENSYVCPFQSIFNDFYCDYCREKFVDHQKLREHYVKHDPATFKDAIMDSMRRLGRKKTQLDIQRIDCRLCPQQINDIETFKEHLTSVHGKILYPVENEFLQFRVIPNNLACIECGQTFPLFQSLKKHMAEHFGTYTCDICGTHFFNESYLIAHQKNHDPNSKPELYTCEECGRSFKLKYSRDMHVTTQHRKEAAFQCIKCDGMFFSSRQRFKHMMEVHGERSTFQCSQCDRVYDSRKTLLDHMRRIHVKMLKHKCSMCERRFYLPSMLKDHMAIHTGEKNYKCDYCGKSYPRLKSLKVHLQSHAAVKKYKCAHCSASYGQNVSLKNHMKRTHQHGLEEGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00288270;
90% Identity: -
80% Identity: -