Basic Information

Insect: Lerema accius
Gene Symbol: RGM1
Assembly: None
Location: scaffold949:1237010-1243191[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.018 1.1 9.8 1.0 2 23 73 94 72 94 0.96

2 12 0.0086 0.53 10.8 0.8 3 23 102 123 100 123 0.94

3 12 0.23 14 6.3 0.1 2 23 131 153 130 153 0.88

4 12 0.00034 0.021 15.2 5.0 1 23 159 181 159 181 0.97

5 12 2.4e-07 1.5e-05 25.1 3.0 1 23 187 209 187 209 0.97

6 12 0.0024 0.15 12.6 0.6 1 21 215 235 215 236 0.94

7 12 0.13 8.3 7.0 0.8 3 19 257 273 256 278 0.88

8 12 0.00066 0.041 14.3 3.3 1 23 582 604 582 604 0.98

9 12 0.0002 0.012 15.9 1.6 3 23 613 634 613 634 0.97

10 12 0.003 0.19 12.2 0.4 1 23 643 666 643 666 0.91

11 12 0.00022 0.013 15.8 1.0 2 23 673 696 672 696 0.91

12 12 2.7e-05 0.0017 18.7 1.8 1 21 702 722 702 723 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.018	1.1	9.8	1.0	2	23	73	94	72	94	0.96
2	12	0.0086	0.53	10.8	0.8	3	23	102	123	100	123	0.94
3	12	0.23	14	6.3	0.1	2	23	131	153	130	153	0.88
4	12	0.00034	0.021	15.2	5.0	1	23	159	181	159	181	0.97
5	12	2.4e-07	1.5e-05	25.1	3.0	1	23	187	209	187	209	0.97
6	12	0.0024	0.15	12.6	0.6	1	21	215	235	215	236	0.94
7	12	0.13	8.3	7.0	0.8	3	19	257	273	256	278	0.88
8	12	0.00066	0.041	14.3	3.3	1	23	582	604	582	604	0.98
9	12	0.0002	0.012	15.9	1.6	3	23	613	634	613	634	0.97
10	12	0.003	0.19	12.2	0.4	1	23	643	666	643	666	0.91
11	12	0.00022	0.013	15.8	1.0	2	23	673	696	672	696	0.91
12	12	2.7e-05	0.0017	18.7	1.8	1	21	702	722	702	723	0.95

Sequence Information

Coding Sequence: ATGGAATCAAACCTAACTTTTTTTAGTTTACCTTTCGTAGATCCGGAAACATCGGACTTAGCGTTCAGGAATAGAGGTGCAGAATGTGACTCGGACATAAACAATCAGTTACAACTCCAGGGCTTACAAAGCTTGAGTTCAGATGATGTCATCGCACAATTCCTTACTGCCGATGGCCCTTTGGAGGAGCCGGATTTGAATGGGCCTACCACCTTGCACTGCGAGATTTGTGCCAAGCAGTTTGATAATGCCAAGAAGTATTATGGACACCTACGAGTTCATTCTAAAGATAATTTGTGGATTTGTGACAAGTGTCCTGACCAGAAATTTTCTACTAAGCAACAACTGATGAAACATAGTCTCACCCATAAGCCTTTAGCAAGAGTCTGGAAGTGTCCTCAGTGCAGCCTTGTCTTTGAAGCTTTATGGAGACTGCAACAGCATCTTTTTGCCAAACACCTGGATTACCGACCCCACAAGTGTGAGCAGTGTGGGAAAGAATTTCATAAGTTATCAGATTACAAAAAACATCAAGATGTGCATAATAATGTTAAAAAACATTCATGCACTGAATGTGACGCGAAATTCAGCGATAAATCAAATCTCAAGAGGCATATGTTGCGGCACACCAACCAGAAGCTATACTGCTGCCCAGGATGTGGGAACAAATTTCAACAGATAGCTTCCTTGAACCGACACAAAAACGTTTGTGTTCTAAATGCACAAGTGGACAATGGCAAGATAGAGAAATCTATACGGAAAAATTACTGCAGAATATGCGGTTTAGTATTCCAGTATAAAACTGCACTTGTTGAACATTGCATCAAACAACACACAAACAATAACAGCGAAGTGAGCAGAGACCAGAAGCTGAGCCAATTAAACGCCGACGCCAACCGGACCGTCGACAACATCGTCGACGATATCTTGTCGGCCGAGGACGACTACATGACCATGTCCACACCCAACATGTTCAACTCGCTCACAACACAACAACCTCTCCAACAGGACACCAATACCTACGACAACCTCATGCAAATAGAATTCTTCAAAGACATGAATCTGTACTCCCTAGACGAGGAGCTCCTGTACAACGATATTGACTTTGACACATTTCATAATGGCCACATGTTTAATATGAACACGAATGATATCGATTACTGCATCAACGACCGGAACACCGAGATACAGTTCGATTTCAACGATCCCGCCAGGAACATGGAGCAGGATCTAATGAATGCCTTATACCAGGCCAAGGATGAGCCGTGTGCCTTACCAGAGGAACTCCTCGACGAAATGACCGATTTTAGCAAACCCATCGAACCTGAGAATCCACCCTTATCAGTCAACGAATGCGCTACGATTTTCGAAAGCGACGTCGATCTCGAGGCCAGCAGTAACTTGGCTGCGAACTTGAACCAACTGATCGGGGAGAATAGCGTTCAATACATTTCTACTGAGGACGATGATACGTTTATTATAAGCTTGAACAGCGAAATAGACGCGGAGCAACTGACTGACATGTTAAATATAGGGGCGGGGCCTCTCGACGACAACCCTGACCTGGATTCATCTGAGGAGGAGGACGGCTATGTAGGGCTCCCAGAATATATCGTGCCTATTATAGTAGAGATCAAAGAAACTGTCAAACCGGAAACTGTCAAGGAGCCCCCTGTAGATGAGAAACAAAATAAGAATGTATCTAAAAAGAAAAAGAATAAGAAGGAAAAGAAGTCAGTGCTGTTTGTGTGTCGCGTGTGCTGTAAAGTGTTCAATAGGAACGACAACTATAAATCGCATATGGGTACTCACTACGCTAAGCTCCGGCGGCACGGCTGCAAGGAGTGCGGGCTGCGGTTCGGGTACCGCTCTACACTCAACAAGCACCGGCGAGCCAAGCACGCCACTGCCGCCGCCACGCTGGCCCACGCCTGCTCCCAGTGCGACAGGAAGTTCAAGGAGGCATGGATGCTCCGCGACCACGTGGGCCGCGCGCACGACCGGCTGGTGCCGCACGCCTGCCCGCGCGCCGCCTGCGGACGTCGCTTCTACAAGCGGAGCGACCTCACCGTGCATCTCAGGTACCACACGGGCGAGCGGCCGTTCTCGTGCGAGGTGTGTTCCAAGTCGTTCCCGCACATATCCCATCTCAAGAGGCACGAGCGATCCGTCGACTGCACTAAATGGGCAAAAAAGATTAAAACGGAAGTGATCCACCACGACGGAGATCTCAATGGATGA
Protein Sequence: MESNLTFFSLPFVDPETSDLAFRNRGAECDSDINNQLQLQGLQSLSSDDVIAQFLTADGPLEEPDLNGPTTLHCEICAKQFDNAKKYYGHLRVHSKDNLWICDKCPDQKFSTKQQLMKHSLTHKPLARVWKCPQCSLVFEALWRLQQHLFAKHLDYRPHKCEQCGKEFHKLSDYKKHQDVHNNVKKHSCTECDAKFSDKSNLKRHMLRHTNQKLYCCPGCGNKFQQIASLNRHKNVCVLNAQVDNGKIEKSIRKNYCRICGLVFQYKTALVEHCIKQHTNNNSEVSRDQKLSQLNADANRTVDNIVDDILSAEDDYMTMSTPNMFNSLTTQQPLQQDTNTYDNLMQIEFFKDMNLYSLDEELLYNDIDFDTFHNGHMFNMNTNDIDYCINDRNTEIQFDFNDPARNMEQDLMNALYQAKDEPCALPEELLDEMTDFSKPIEPENPPLSVNECATIFESDVDLEASSNLAANLNQLIGENSVQYISTEDDDTFIISLNSEIDAEQLTDMLNIGAGPLDDNPDLDSSEEEDGYVGLPEYIVPIIVEIKETVKPETVKEPPVDEKQNKNVSKKKKNKKEKKSVLFVCRVCCKVFNRNDNYKSHMGTHYAKLRRHGCKECGLRFGYRSTLNKHRRAKHATAAATLAHACSQCDRKFKEAWMLRDHVGRAHDRLVPHACPRAACGRRFYKRSDLTVHLRYHTGERPFSCEVCSKSFPHISHLKRHERSVDCTKWAKKIKTEVIHHDGDLNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01439288;
90% Identity: -
80% Identity: -