Basic Information

Insect
Lerema accius
Gene Symbol
-
Assembly
None
Location
scaffold20:147075-154809[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.9e-06 0.00037 20.7 0.5 1 23 180 202 180 202 0.97
2 11 0.00019 0.012 16.0 0.6 1 23 208 231 208 231 0.97
3 11 0.0052 0.32 11.5 0.6 1 23 238 260 238 260 0.98
4 11 0.0051 0.32 11.5 1.4 1 23 267 289 267 289 0.97
5 11 0.59 36 5.0 2.8 1 23 295 317 295 317 0.95
6 11 0.0012 0.076 13.5 4.1 1 23 323 346 323 346 0.96
7 11 0.014 0.89 10.1 1.4 2 23 352 371 351 371 0.96
8 11 2e-07 1.3e-05 25.4 1.4 1 23 377 399 377 399 0.97
9 11 2.9e-06 0.00018 21.7 1.2 1 23 405 427 405 427 0.98
10 11 2.8e-05 0.0018 18.6 0.3 1 23 433 456 433 456 0.97
11 11 0.005 0.31 11.5 0.4 1 21 462 482 462 483 0.92

Sequence Information

Coding Sequence
ATGGCTAATATAAAAAGTAGAGTAAGAGCACCGAAAAAAACAAATACGAAAAGCAAAGGGCGTGGTAAAATAAAAAAAAACTCAACAGGTGTGAGGGAATCGGCTAAGCCACATATTGTGATGAAAAGACCTAGCGTTGGGAAGTGCTTAACATCAGAAGAAAAGGTGAAGTATCTATTGCAAAATGGTCACAGATTGAAAGATAAGCTGGTTGACAAAATAGCTATTAAGAAACAAAGTATTAAAGATTGTCTAAGAAAGAATACCAAAGATCAATTCAAGCTGACTAACAATACATTGCAAGGTGAACTAATGATTGATGATTATAATGCCAAAAGAAAAGTTTTGCAAATCAAGAGGGCCGAGGAAAAGGGTCTTAATAATAATAATGTGACTGTCAATGATCAAAACAAGTTATCGGCAGCCACAAGCAATGTGTCTAATGTCACAGTAAATAATAAACAGGAGAAAGGAAAAAGGATTGTGAGAGCAAAATGTGTGGATATCAGCAAGGTTGCAGTTGTAACTTCATCATTTTATCAGTGTGACTATTGCCAGAAAATATTTAATATTAAAGCTTCATTGCGTAGACATATCCTCGGTCATATTGACCTAAAACTATATAGCTGCTCAAGTTGTCCGAGGAAATTTGAGAGTCGAGCCAACTTATTAATACATGCTAAGAAATCTCATCCAAACACAAAGGAACACTATATGTGTACATTATGTTTTAAAGCATTTTTATCTAAAAACAACATGATACTCCACATGGCCAGTCATGGCCCAAAGGAAAATGAGTTTAAATGTATTTATTGTGATGAGGAGTTCAATCAACAGATCTTTTTGAACCAACATGAGAAAAAACATTTGGTTGGGGGAAAATTTCTGTGCACCGTGTGCAATACAAGCTATGATTGCAGAAACCAGTTGTCTTTGCATGTAAAGAGCCATTTGAAAATAAAGGATTTTGTATGCCAACATTGTGGCAAAGATTTTCTGAGGTTAAATTCATTGAAACGTCACGTTCAGATTTGTCACGGTGGACATCGCATTCAATGCCCAATATGCAAGAAGTATCTAAAAGGCCATTTAACAGAGCATATGCGTGTGCATGATAAAAAGCGGCCTCATATATGTCCTGAGTGTGGGCAAAGCTTCACTCAGTCCACTCAGTTGAATGTCCACCGTCGTTCTCATACCGGAGCAAGACCATATCCTTGTCGGATTTGCAACCGAGCATTCACCCACTCTAATGCTCTCATGCTGCATATAAGGAGACATACCGGAGAGAAACCGTTTCAATGTGCCATGTGTCCTTTGGCCTTTTCACAACTGCCTCATATGAAGGCTCATATGCGCAACATTCATAAGAAGGAGGAGTGTTATAAATGTAAGAAATGTGATGAGTTTTTTAGGTTGAAGGTTGAAATTGAGAATCATGAGAAGGTCTGCACCGTTGGTGACAAGGAGCTTTCGTTTGAGGAGAAGATTCAAGCGTCCGTGCAGCCTGTGGAGATAGAGGTGGAATCGGTCATGACCCTCTCCCGCATGAGGTTCCTGCTAGCCCTCCTCCTTACCATGATCGCTACCAAAGAAAAACTGAGATATTTAGGTTTCAACAAACGCCTGGTTGATGACCTCCTGGTTGAATCCCTTGAGGCCATGGGCCACAACCCCTGTAAGGACGAGACCTTACGCCCTTTGAATCGCCTTCGAAGCAACATCCAGATTTTACTCAATGGCACAGTCCCAAAACAACAGATGGAGAAATTCAAGAAGGAAAATAAGACTACAGAAGAATTGCTGGAACTTCTCACCAACGAAAAGAAGAATTGTTAA
Protein Sequence
MANIKSRVRAPKKTNTKSKGRGKIKKNSTGVRESAKPHIVMKRPSVGKCLTSEEKVKYLLQNGHRLKDKLVDKIAIKKQSIKDCLRKNTKDQFKLTNNTLQGELMIDDYNAKRKVLQIKRAEEKGLNNNNVTVNDQNKLSAATSNVSNVTVNNKQEKGKRIVRAKCVDISKVAVVTSSFYQCDYCQKIFNIKASLRRHILGHIDLKLYSCSSCPRKFESRANLLIHAKKSHPNTKEHYMCTLCFKAFLSKNNMILHMASHGPKENEFKCIYCDEEFNQQIFLNQHEKKHLVGGKFLCTVCNTSYDCRNQLSLHVKSHLKIKDFVCQHCGKDFLRLNSLKRHVQICHGGHRIQCPICKKYLKGHLTEHMRVHDKKRPHICPECGQSFTQSTQLNVHRRSHTGARPYPCRICNRAFTHSNALMLHIRRHTGEKPFQCAMCPLAFSQLPHMKAHMRNIHKKEECYKCKKCDEFFRLKVEIENHEKVCTVGDKELSFEEKIQASVQPVEIEVESVMTLSRMRFLLALLLTMIATKEKLRYLGFNKRLVDDLLVESLEAMGHNPCKDETLRPLNRLRSNIQILLNGTVPKQQMEKFKKENKTTEELLELLTNEKKNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00167105;
90% Identity
iTF_01082701;
80% Identity
-